Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20nana_20[genbank_20GCA_5F001600835.1_202016-03-01] 13 sequences; 7,579,486 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4 138 3e-27 seq6 129 1e-24 seq1 104 6e-17 >seq4 Length=1186707 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| || || || |||||||| || ||||| ||| ||||||| Sbjct 398867 CAAATCTTCGTCAAGACTCTGACTGGCAAGACGATCACGCTTGAGGTTGAATCCTCAGAC 398926 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| ||||| |||||||| || || ||||| |||||||| || Sbjct 398927 ACGATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAACAG 398986 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | || || ||| || ||| | Sbjct 398987 CGTCTGATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGTACCCTGAGCGACTACAACATT 399046 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || ||||| || || Sbjct 399047 CAGAAGGAGAGCACCCTGCACCTCGT 399072 >seq6 Length=615380 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||| | ||||| || || || || || || ||||||||||| |||||||| || ||| Sbjct 241558 CAAGTGTTCGTCAAGACCCTGACCGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 241499 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || ||||| |||||||| || || ||||| |||||||| || Sbjct 241498 ACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAACAG 241439 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| || ||||| | ||||| ||| || ||| || Sbjct 241438 CGCCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTGAGCGACTACAACATC 241379 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| Sbjct 241378 CAGAAGGAGAGCACTCTTCACCTTGT 241353 >seq1 Length=1489088 Score = 104 bits (114), Expect = 6e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||| || || |||||||| || || || || || ||||| || || || ||||| Sbjct 496710 CTCACTGGCAAGACGATCACGCTGGAAGTCGAGTCGTCGGACACGATTGACAATGTCAAG 496651 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 || ||||||||||| || || || ||||||||||| || || || ||||||||||| Sbjct 496650 GCCAAAATTCAGGACAAGGAGGGCATTCCTCCGGACCAACAGCGTCTGATCTTCGCCGGC 496591 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGA 178111 || ||||| ||||| || | || || ||| || ||| |||| || || Sbjct 496590 AAGCAGCTGGAAGACGGCCGTACGCTGAGCGACTACAACATCCAGAAGGA 496541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730999503522