Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20nana_20[genbank_20GCA_5F001600835.1_202016-03-01] 13 sequences; 7,579,486 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq6 154 1e-32 seq4 154 1e-32 seq1 143 2e-29 >seq6 Length=615380 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| || || || |||||||||||||| ||||| |||||| Sbjct 241335 CCACCACGCAGACGAAGCACAAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 241394 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || |||||||||||||| || ||||||||||||||||||| ||| Sbjct 241395 AGAGTGCGACCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGGGGG 241454 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||||||| ||| || ||||| | | |||||| ||||||||| Sbjct 241455 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGGAAGACTCCACC 241514 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || ||||| || || ||||| ||||| ||||| | |||||| Sbjct 241515 TCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTGACGAACACTTGCATG 241562 Score = 122 bits (134), Expect = 8e-23 Identities = 181/255 (71%), Gaps = 25/255 (10%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| ||||| | ||| | ||| ||||| |||||||||||||||||||| || ||||| Sbjct 150935 CGCCACCGCGCAAACGAAGCACGAGATGGAGCGTGCTCTCCTTCTGAATATTGTAGTCAC 150876 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 | || || | || || |||||||| || || || |||||||| |||||||||| | Sbjct 150875 TCAATGTTCGTCCATCCTCCAGCTGCTTTCCCGCAAAAATCAGGCGTTGTTGGTCCGGTG 150816 Query 41754 GAACGCTCTCCTTGTCCATGATTTT-----------TTGCTTCAACG--ACGAC--ACAG 41798 | | | ||||||||| ||| || ||| | | | | || || || Sbjct 150815 GGATTCCTTCCTTGTCCTGGATCTTGGTTTTCACTGTTGTTACCAAGGCACTACGTACCA 150756 Query 41799 TG-TCGCTCGACTC--------CAC-CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTT 41848 || ||| | || || ||| ||||| ||| |||||||||||||| ||||||||| Sbjct 150755 TGCTCGATAGAGTCACTGCTCTCACACTCCAACGTAATCGTTTTACCCGTGAGCGTCTTT 150696 Query 41849 ACGAAAATCTGCATG 41863 ||||||||||||||| Sbjct 150695 ACGAAAATCTGCATG 150681 >seq4 Length=1186707 Score = 154 bits (170), Expect = 1e-32 Identities = 163/213 (77%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||| || ||||| |||||||||||||||||||| |||||| ||||| || |||| || Sbjct 399073 CACGAGGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAGGGTACGGCCGTCCTC 399014 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 ||||||||| |||||||| ||||| ||||||||||||| ||| | | |||||||||| Sbjct 399013 GAGCTGCTTACCGGCGAAGATCAGACGCTGTTGGTCCGGGGGGATACCCTCCTTGTCCTG 398954 Query 41773 GATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| || ||| || | || | ||||| || || ||||| | ||| ||||| Sbjct 398953 GATCTTGGCCTTGACATTGTCG--ATCGTGTCTGAGGATTCAACCTCAAGCGTGATCGTC 398896 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || ||||| ||||| ||||| || |||||| Sbjct 398895 TTGCCAGTCAGAGTCTTGACGAAGATTTGCATG 398863 >seq1 Length=1489088 Score = 143 bits (158), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | ||| || || ||||||||||||||||| ||||| |||||| Sbjct 496504 GCCACCACGAAGGCGCAGCACGAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCT 496563 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || |||| || ||||||||||||||||| ||||| ||||||||||||| || Sbjct 496564 CAGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGAGG 496623 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || |||||||||| ||| |||| || | || | | | ||||| |||||| | Sbjct 496624 AATGCCCTCCTTGTCC-TGAATTTTGGCCTTGACATTGTCAATCGTGTCCGACGACTCGA 496682 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAG 41841 | |||| ||| ||||| || || || || Sbjct 496683 CTTCCAGCGTGATCGTCTTGCCAGTGAG 496710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303924875600