Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20obtusa_20[genbank_20GCA_5F001264985.1_202015-08-11] 1,709 sequences; 7,842,882 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1389 179 9e-40 seq1156 127 5e-24 seq1105 120 7e-22 seq956 93.3 1e-13 >seq1389 Length=28264 Score = 179 bits (198), Expect = 9e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || ||||| | || || Sbjct 4319 AGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTACGGCCGTCC 4378 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| ||||| |||||||| ||||||| || ||||||||| Sbjct 4379 TCGAGCTGCTTACCAGCGAAGATCAGGCGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCC 4438 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || ||||||||||| ||| || |||||||| || |||||| Sbjct 4439 TGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAGGACTCGACCTCGAGGGTAATCGTC 4498 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || ||||| ||||| Sbjct 4499 TTACCCGTGAGGGTCTTGACGAACACTTGCAT 4530 >seq1156 Length=36076 Score = 127 bits (140), Expect = 5e-24 Identities = 149/200 (75%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || ||| ||| || |||||||| || || || || | ||||| Sbjct 1787 AGCACAAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCC 1728 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | || || ||||| ||||||| || ||||||||| Sbjct 1727 TCGAGCTGCTTGCCGGCGAAGATCAACCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC 1668 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 || | ||| ||||| ||||| ||||| ||| || ||||| ||||||||| Sbjct 1667 TGCACCTTCGACTTCACAACGTCGATCGTGTC---GCTCGACTCGACCTCCAGAGTGATC 1611 Query 211080 GTCTTTCCCGTGAGAGTCTT 211099 ||||| || ||||||||||| Sbjct 1610 GTCTTGCCAGTGAGAGTCTT 1591 >seq1105 Length=2600 Score = 120 bits (132), Expect = 7e-22 Identities = 165/238 (69%), Gaps = 26/238 (11%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || || || | ||| || Sbjct 1766 AGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGTCCGTCC 1825 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| ||||| || ||||| || || | || ||||||||| Sbjct 1826 TCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 1885 Query 211023 TGGATCTTTTGTTTCA--------------------------CGTTTTCGATGGTGTCAG 211056 ||||||||| ||||| | || ||||| || || Sbjct 1886 TGGATCTTTGCTTTCACTGGGTCAGCGCGGTGGCGCACGCACCATTCTCGATCGTATCGC 1945 Query 211057 AGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || |||||||| ||||||||||| || || || ||||| |||||||||||||| Sbjct 1946 TGCTCTCCACCTCGAGGGTGATCGTCTTGCCAGTAAGCGTCTTCACAAACACCTGCAT 2003 >seq956 Length=46317 Score = 93.3 bits (102), Expect = 1e-13 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 |||||||| || ||||| ||||| ||||| || ||||||| |||||||||||||||||| Sbjct 86 TGCTTGCCGGCAAAGATCAGGCGCTGTTGATCCGGAGGAATGCCTTCCTTGTCCTGGATC 27 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTC 211054 || |||||||| ||||| ||||| Sbjct 26 TTGGCCTTCACGTTCTCGATCGTGTC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159126618555785