Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20pachydermatis_20[genbank_20GCA_5F001264975.1_202015-08- 11] 61 sequences; 8,158,346 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq59 107 1e-17 seq27 91.5 1e-12 seq60 86.0 4e-11 >seq59 Length=643831 Score = 107 bits (118), Expect = 1e-17 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| || ||||| || || || || |||||||| | ||||| ||| || || Sbjct 499058 ACGAAGGCGCAGTACCAGGTGCAGGGTGCTTTCTTTTTGGATGTTATAGTCACTGAGTGT 499117 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | || || || |||||||| ||||| || ||||| |||||||| ||||||||||| Sbjct 499118 ACGCCCGTCCTCTAGCTGCTTTCCGGCAAAGATCAGACGCTGTTGATCCGGAGGAATTCC 499177 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGAC 480697 |||||||||||||||||| |||||| Sbjct 499178 CTCCTTGTCTTGAATCTTTGCTTTGAC 499204 >seq27 Length=46380 Score = 91.5 bits (100), Expect = 1e-12 Identities = 161/229 (70%), Gaps = 22/229 (10%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAGT 480610 || |||||||| || || ||||| || || || || | || || || ||| ||||| Sbjct 105 CGCAGACGGAGAACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTC-GCTCAGAGT 163 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| || | ||||| |||||||| || | |||||||| || |||||||| || Sbjct 164 GCGCCCATCCTCCAACTGCTTACCAGCAAAGATCAAGCGTTGTTGGTCCGGAGGAATACC 223 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAG-CTTCA-ATAGT--ATCAGTGTGTGAAG--- 480723 ||||||||| || ||||| || ||||| || || ||| |||| ||||| Sbjct 224 TTCCTTGTCCTGGATCTT---------AGCCTTCACATTGTCGATC-GTGTCTGAAGACT 273 Query 480724 ---TTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| || || || || ||||| ||||||||||||||||| Sbjct 274 CCACCTCCAGGGTGATCGTCTTGCCAGTGAGCGTCTTAACGAAAATTTG 322 >seq60 Length=383220 Score = 86.0 bits (94), Expect = 4e-11 Identities = 104/139 (75%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609 ||| |||||||| ||||| || || || || || || | || || || ||| |||| Sbjct 383036 ACGCAGACGGAGAACAAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTC-GCTCAGAG 383094 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | | ||| || || ||||| ||||| ||||||||||| ||||| || || ||||| | Sbjct 383095 TGCGGCCATCCTCCAGCTGCTTACCAGCGAAAATAAGACGCTGTTGGTCCGGTGGAATGC 383154 Query 480670 CTTCCTTGTCTTGAATCTT 480688 | |||||||| || ||||| Sbjct 383155 CCTCCTTGTCCTGGATCTT 383173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268176583414028