Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20pachydermatis_20[genbank_20GCA_5F001278385.1_202015-09- 02] 91 sequences; 8,150,648 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq68 114 8e-20 seq53 107 1e-17 >seq68 Length=564861 Score = 114 bits (126), Expect = 8e-20 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609 ||| |||||||| ||||| || || || || || || | || || || ||| |||| Sbjct 517723 ACGCAGACGGAGAACAAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTC-GCTCAGAG 517781 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | | ||| || || ||||| ||||| ||||||||||| ||||| || || ||||| | Sbjct 517782 TGCGGCCATCCTCCAGCTGCTTACCAGCGAAAATAAGACGCTGTTGGTCCGGTGGAATGC 517841 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAA 480729 | |||||||| || ||||| ||||| ||||| || || | | | ||| | Sbjct 517842 CCTCCTTGTCCTGGATCTTAGCCTTGACGTTATCAATCGTGTCCGAGGATTCGACTTCCA 517901 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||||||||||| || |||||||| |||||||| || Sbjct 517902 ATGTAATAGTTTTACCAGTAAGAGTCTTGACGAAAATCTG 517941 Score = 91.5 bits (100), Expect = 1e-12 Identities = 161/229 (70%), Gaps = 22/229 (10%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAGT 480610 || |||||||| || || ||||| || || || || | || || || ||| ||||| Sbjct 518180 CGCAGACGGAGAACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTC-GCTCAGAGT 518238 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| || | ||||| |||||||| || | |||||||| || |||||||| || Sbjct 518239 GCGCCCATCCTCCAACTGCTTACCAGCAAAGATCAAGCGTTGTTGGTCCGGAGGAATACC 518298 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAG-CTTCA-ATAGT--ATCAGTGTGTGAAG--- 480723 ||||||||| || ||||| || ||||| || || ||| |||| ||||| Sbjct 518299 TTCCTTGTCCTGGATCTT---------AGCCTTCACATTGTCGATC-GTGTCTGAAGACT 518348 Query 480724 ---TTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| || || || || ||||| ||||||||||||||||| Sbjct 518349 CCACCTCCAGGGTGATCGTCTTGCCAGTGAGCGTCTTAACGAAAATTTG 518397 Score = 89.7 bits (98), Expect = 3e-12 Identities = 159/229 (69%), Gaps = 20/229 (9%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| || || || | ||||| || || || || || || || ||| | ||| Sbjct 517951 ACGAAGGCGAAGCACCAAGTGAAGAGTGCTCTCCTTCTGAATGTTGTAGTCACTCAAAGT 518010 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| || | ||||| ||||| ||||||||||| ||||| || |||||||| || Sbjct 518011 ACGGCCATCCTCCAACTGCTTACCAGCGAAAATAAGACGCTGTTGGTCGGGAGGAATACC 518070 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAG-CTTCA-ATAGT--ATCAGTGTGTGAAG--- 480723 ||||||||| || ||||| || ||||| || || ||| |||| ||||| Sbjct 518071 TTCCTTGTCCTGGATCTT---------AGCCTTCACATTGTCGATC-GTGTCTGAAGACT 518120 Query 480724 ---TTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| || || || || || |||||||| ||||| ||||| Sbjct 518121 CCACCTCCAGGGTGATCGTCTTGCCAGTAAGAGTCTTGACGAAGATTTG 518169 >seq53 Length=642545 Score = 107 bits (118), Expect = 1e-17 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| || ||||| || || || || |||||||| | ||||| ||| || || Sbjct 498939 ACGAAGGCGCAGTACCAGGTGCAGGGTGCTTTCTTTTTGGATGTTATAGTCACTGAGTGT 498998 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | || || || |||||||| ||||| || ||||| |||||||| ||||||||||| Sbjct 498999 ACGCCCGTCCTCTAGCTGCTTTCCGGCAAAGATCAGACGCTGTTGATCCGGAGGAATTCC 499058 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGAC 480697 |||||||||||||||||| |||||| Sbjct 499059 CTCCTTGTCTTGAATCTTTGCTTTGAC 499085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268175296568468