Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20pachydermatis_20[genbank_20GCA_5F001278385.1_202015-09- 02] 91 sequences; 8,150,648 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq68 98.7 9e-16 seq53 93.3 4e-14 seq11 82.4 7e-11 seq1 82.4 7e-11 >seq68 Length=564861 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| ||||| || || || || || || || || || || | | Sbjct 518400 ATGCAAATTTTCGTTAAGACGCTCACTGGCAAGACGATCACCCTGGAGGTGGAGTCTTCA 518341 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || ||||| || ||| Sbjct 518340 GACACGATCGACAATGTGAAGGCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCAA 518281 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||||||||| || || ||| |||||||| | | | || || || ||| Sbjct 518280 CAACGCTTGATCTTTGCTGGTAAGCAGTTGGAGGATGGGCGCACTCTGAGCGACTACAAC 518221 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || ||| |||| | || ||||||| || Sbjct 518220 ATCCAGAAGGAGAGCACTCTTCACCTGGTTCTCCGTCTGCGCGGTGG 518174 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || |||||||||||||| | ||||| ||| || | Sbjct 517944 ATGCAGATTTTCGTCAAGACTCTTACTGGTAAAACTATTACATTGGAAGTCGAATCCTCG 517885 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || ||| Sbjct 517884 GACACGATTGATAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCACCGGACCAA 517825 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || ||| | || || || || || |||||||||||| Sbjct 517824 CAGCGTCTTATTTTCGCTGGTAAGCAGCTGGAGGAT 517789 >seq53 Length=642545 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/142 (76%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || ||| |||||| |||||||| || ||||| ||||| |||||||| ||| |||||||| Sbjct 499085 GTCAAAGCAAAGATTCAAGACAAGGAGGGAATTCCTCCGGATCAACAGCGTCTGATCTTT 499026 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCA--GATTATAACATTCAAAAGGAAT 24896 ||||| || ||||| ||||| | | ||| ||| || |||||||| ||||| ||| Sbjct 499025 GCCGGAAAGCAGCTAGAGGACGGGCG-TACA-CTCAGTGACTATAACATCCAAAAAGAAA 498968 Query 24897 CGACACTACACTTGGTGTTGCG 24918 || || ||| |||| |||| Sbjct 498967 GCACCCTGCACCTGGTACTGCG 498946 >seq11 Length=163833 Score = 82.4 bits (90), Expect = 7e-11 Identities = 276/421 (66%), Gaps = 19/421 (5%) Strand=Plus/Plus Query 126046 GTGGAAGGCGTGTTTTTCTCGGGTAGTTTTGCGGCTAttttttttATAAAGACAAAGGGT 126105 ||||| ||| | || |||||||| |||||| | || || | | |||| ||| Sbjct 12449 GTGGAGGGCATCTTCTTCTCGGGCTCGTTTGCGTCGATCTTCTGGCTGAAGAAGCGTGGT 12508 Query 126106 ATAATGCCCGGTCTAACGTTCAGCAACGAGTTGATTTCTCGTGACGAAGGACTCCATACG 126165 | ||||| ||||| ||||| |||||| | ||| | |||||||| || || || || Sbjct 12509 CTCATGCCGGGTCTGTCGTTCTCGAACGAGCTTATTACCCGTGACGAGGGTCTGCACACC 12568 Query 126166 GACTTTGCATGTCTGTATTACAATAATTATATACCCGAAAATGAAAAGTTGTCTGC-TGA 126224 |||||||| || || | || | | || ||| ||| | | | | ||| Sbjct 12569 GACTTTGCGTGCTTGCTGTTCAGTCA-------CCTGAA---GAAGCGCTCGCACCCTGA 12618 Query 126225 CGAAATTTTAA--GTATGTTCATCGAAGCTGTCAACATTGAAAAGGAATTCTTTACGTCG 126282 | | | || | || | | ||| |||||| || || ||||| || || ||| | Sbjct 12619 C--ACGGTCAACCGCATCATTACCGAGGCTGTCTCGATCGAGAAGGACTTTTTGACGGAG 12676 Query 126283 GCGCTGCCATGCGATATGT-TGGGAATGAATTCTACAGCGATGTGCGAATATATAGAGTT 126341 || ||||| || | | | || |||||| || |||||| | || || ||||| Sbjct 12677 GCTCTGCC-TGTGTCGCTTATCGGCATGAATGCTCGTCTCATGTGCCAGTACATTGAGTT 12735 Query 126342 CGTAGCGGACCGTTTGCTCGTCGAATTACGACAACC-GAAACACTTTAATACACCCAATC 126400 || || |||||| |||| |||| | || ||||| ||| |||| | | | |||| Sbjct 12736 TGTGGCCGACCGTCTGCTGGTCGCTCT-CGGCAACCCGAAGCACTACCACTCGACGAATC 12794 Query 126401 CATTTAACTTTATGAACAATATTTCTCTCGAGGGAAAGACTAACTTTTTCGAGAGACGTG 126460 ||||| |||||||| | || || || || |||| ||| | |||||||||||| | |||| Sbjct 12795 CATTTGACTTTATGGAGAACATCTCGCTGCAGGGCAAGTCGAACTTTTTCGAGCGTCGTG 12854 Query 126461 T 126461 | Sbjct 12855 T 12855 >seq1 Length=1489072 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || || || || |||||||| || || || | Sbjct 830839 ATGCAAATCTTCGTCAAGACTCTGACTGGCAAGACGATCACGCTCGAGGTTGAGTCCTCG 830780 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || ||||| || ||| Sbjct 830779 GACACGATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAA 830720 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || ||| | || || || || || ||||||||||| Sbjct 830719 CAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAGGA 830685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897088241480