Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20pachydermatis_20[genbank_20GCA_5F001278385.1_202015-09- 02] 91 sequences; 8,150,648 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq11 224 1e-52 seq40 113 6e-19 seq47 86.0 9e-11 seq1 86.0 9e-11 >seq11 Length=163833 Score = 224 bits (248), Expect = 1e-52 Identities = 384/543 (71%), Gaps = 18/543 (3%) Strand=Plus/Plus Query 1455742 CCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCG 1455801 ||||||||| |||||||| ||||||||||| ||| |||| |||||| || ||||| | Sbjct 11989 CCGCTTTGTGCTGTTCCCGATCCGCTACCACGAGATCTGGGCGATGTAC-AAGAAGGCTG 12047 Query 1455802 AGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCG-ACACGGTCCACTGGGTG 1455860 ||||||| || |||||||| ||||||||||| || | || | || | | |||||| Sbjct 12048 AGGCCTCGTTCTGGACCGCTGAGGAGGTCGATCT-GTCGAAGGACTTGCACGACTGGGAC 12106 Query 1455861 T--CGC-TGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGC 1455917 ||| ||| |||| ||||||| || || | | |||||| || || || |||||| Sbjct 12107 AACCGCATGAACGACAACGAGCGTCACTTTGTGAGTACCGTCCTTGCGTTCTT-CGCCGC 12165 Query 1455918 CAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCC 1455977 || || || ||| |||||||||| | || || | || || || || || | Sbjct 12166 GTCGGACGGTATTGTGAACGAGAACCTGTTGGAGCGTTTCAGCAACGAAGTGCAGGTGGC 12225 Query 1455978 AGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTA 1456037 ||||| || | || ||||| |||||||| || || ||||| ||||| || ||||| Sbjct 12226 GGAGGCTCGCTGCTTCTACGGTTTCCAGATTATGATGGAGAACATTCACTCGGAGACCTA 12285 Query 1456038 CTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGC 1456097 |||||| || |||||||| ||| || ||| ||| || || |||| || ||| Sbjct 12286 CTCGCTGCTCATCGACACGTACATCCGCGACACGGCGCAGCGCGAGTACCTGTTCAACGC 12345 Query 1456098 CATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGAT---CAA 1456154 ||||| || | || |||| | | |||||||| ||||| | ||||| | Sbjct 12346 TATCGAGACCATTCCCGTTGTGAAGCAGAAGGCCGAGTGGGCCCTTCGCTGGATTGCGGA 12405 Query 1456155 CAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGGGCATC 1456213 ||| | | |||||| || | ||||| || || | ||||||| ||| ||||||||| Sbjct 12406 CAA-GCGTGCCTCG----TTCTCGGAGCGCCTTGTGGCGTTTGCCGCCGTGGAGGGCATC 12460 Query 1456214 TTTTTCTCGGGCAGTTTCTGCG-CCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 || ||||||||| || |||| | ||||| ||||| |||||||| || |||||||| || Sbjct 12461 TTCTTCTCGGGCTCGTT-TGCGTCGATCTTCTGGCTGAAGAAGCGTGGTCTCATGCCGGG 12519 Query 1456273 TCT 1456275 ||| Sbjct 12520 TCT 12522 Score = 161 bits (178), Expect = 1e-33 Identities = 190/252 (75%), Gaps = 4/252 (2%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 ||||| |||||| ||| ||||||||| || ||| | | ||| | ||||| ||| || Sbjct 12632 ATCATTACCGAGGCTGTCTCGATCGAGAAGGACTTTTTGACGGAGGCTCTGCCTGTGTCG 12691 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || ||||||||||| | | | ||||||||||||||||||| | ||||| |||||||| | Sbjct 12692 CTTATCGGCATGAATG-CTCGTCTCATGTGCCAGTACATTG-AGTTTGTGGCCGACCGTC 12749 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 |||| | || |||||| | ||||||||||| || | || || || | ||| Sbjct 12750 TGCTGGTCGCTCTCGGCAAC-CCGAAGCACTACCACTCGACGAATCCATTTGACTTTATG 12808 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTGG-CGAGTACGCC 1456761 ||| |||||||| |||||||| | |||||||||||||| || |||| ||| || ||| Sbjct 12809 GAGAACATCTCGCTGCAGGGCAAGTCGAACTTTTTCGAGCGTCGTGTGGCCGACTATGCC 12868 Query 1456762 AAGGCCGGCGTC 1456773 ||||| || ||| Sbjct 12869 AAGGCTGGTGTC 12880 >seq40 Length=1303022 Score = 113 bits (124), Expect = 6e-19 Identities = 171/240 (71%), Gaps = 10/240 (4%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||| ||| || ||| |||||||||||||||||||| || | | ||| Sbjct 399817 TACTCGACCTACATTTACCGTGTGCTCAAGCAGGTGCACCCGGACACTGGT-----ATC- 399764 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 || |||||| ||||| | ||| | |||||||| || | ||||| |||| ||||||| | Sbjct 399763 TCGAACAAGGCCATGGCTATCCTCAACTCGTTCGTGCAGGACATTTTCGAGCGCATCGCC 399704 Query 725019 ACCGAGGCCGGTCGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGA 725076 ||||||||| ||| || || ||| ||||||| | ||| || |||| |||| Sbjct 399703 ACCGAGGCC--TCGAAGCTCGCCAGCTACAACAAGAAGAGCACCATTTCGTCGCGTGAGA 399646 Query 725077 TCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGG 725136 ||||||| || || || ||||| | | ||| || ||| ||| ||| ||| | |||||| Sbjct 399645 TCCAGACTGCTGTTCGTCTGATTCTCCCCGGTGAGCTGTCCAAGCATGCCATTGCCGAGG 399586 >seq47 Length=989840 Score = 86.0 bits (94), Expect = 9e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 332856 CGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCA 332915 |||| |||| |||| |||| || ||||||||||| || ||||| | | |||||||| Sbjct 151166 CGTCCGTGATGCGCCCAAATCGGAGGATGGCACATCGACTCTGGATCGGCTCGATGATTT 151225 Query 332916 TTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCG 332975 | |||| |||||| || | | ||| |||||||| | | | ||||| || Sbjct 151226 TGTTCGACTGGTTGCATGCAAAGCAAAAACGCGTCGTCGACGCGTAAATCTCCATAGTAC 151285 Query 332976 ACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCT 333035 || | || || || || ||||||| | | || |||||||| || || || |||| Sbjct 151286 GTCGCAACGCTTGCTGTGCACCCGGCGTCATACTATCCGCCTCGTCCAGAATAATAATCT 151345 Query 333036 TGTGGCGCCCGTGCGGCAGATCAACCCTTTTC 333067 |||||||||| |||| || ||| ||||| Sbjct 151346 TGTGGCGCCCCGGCGGAAGTGACACCTTTTTC 151377 >seq1 Length=1489072 Score = 86.0 bits (94), Expect = 9e-11 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 165540 GACGCCCTTTGTGTGGTCATGCGCGCCTATGTCGAAAAGCCGCGCACGACCGTTGGATGG 165599 |||| |||| ||||| ||||||||||| |||| ||||||||||||||||| || ||| Sbjct 792173 GACGGCCTTGTGGTGGTTATGCGCGCCTACTTCGAGAAGCCGCGCACGACCGTGGGCTGG 792114 Query 165600 AAGGGCCTGGCCAGTGACCCCGATCTTGATGGCTCGTGCC 165639 ||||| || || ||||| || || || ||||||| || Sbjct 792113 AAGGGTCTCATCAACGACCCTGACCTCGACGGCTCGTACC 792074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177802422882742