Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20pachydermatis_20[genbank_20GCA_5F001278385.1_202015-09- 02] 91 sequences; 8,150,648 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq53 105 4e-18 seq68 100 2e-16 seq1 87.8 1e-12 >seq53 Length=642545 Score = 105 bits (116), Expect = 4e-18 Identities = 120/160 (75%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| |||| |||| || || ||||| || ||||| |||||||| || Sbjct 498934 CCACCACGAAGGCGCAGTACCAGGTGCAGGGTGCTTTCTTTTTGGATGTTATAGTCACTG 498993 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| ||| |||| || || || || |||||||| || | ||||||||| ||||| || Sbjct 498994 AGTGTACGCCCGTCCTCTAGCTGCTTTCCGGCAAAGATCAGACGCTGTTGATCCGGAGGA 499053 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAA 34639 | ||||||||||||| ||| |||| ||| || ||| || Sbjct 499054 ATTCCCTCCTTGTCT-TGAATCTTTGCTTTGACTATACAA 499092 >seq68 Length=564861 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || || ||||||||||| || ||||| || || || || || | || || || || Sbjct 517742 TGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCCAGCTGC 517801 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 ||||| || || || | ||||||||||||||| || | ||||||||||| |||| || Sbjct 517802 TTACCAGCGAAAATAAGACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCCTGGATC-TT 517860 Query 34624 TGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || ||| || ||| ||||| | || ||||||| || || |||||||| || Sbjct 517861 AGCCTTGACGTTATCAATCGTGTCCGAGGATTCGACTTCCAATGTAATAGTTTTACCAGT 517920 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | || || || ||||||||||| Sbjct 517921 AAGAGTCTTGACGAAAATCTGCAT 517944 Score = 98.7 bits (108), Expect = 6e-16 Identities = 157/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| || |||||||||||||| || ||||| || || || || ||| Sbjct 518183 AGACGGAGAACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGC 518242 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | || ||||| ||||| || || || ||||||||||| || | || ||| Sbjct 518243 CCATCCTCCAACTGCTTACCAGCAAAGATCAAGCGTTGTTGGTCCGGAGGAATACCTTCC 518302 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || || | || |||||| |||||| |||| ||| Sbjct 518303 TTGTCCTGGATC-TTAGCCTTCACATTGTCGATCGTGTCTGAAGACTCCACCTCCAGGGT 518361 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 ||||| || || || | ||| || || ||||| |||||| || Sbjct 518362 GATCGTCTTGCCAGTGAGCGTCTTAACGAAAATTTGCATGATG 518404 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAAT--CTG 34537 || || | ||| || | |||||| || |||||||||||||| |||||||| || | || Sbjct 517946 CCACCACGAAGGCGAAGCACCAAGTGAAGAGTGCTCTCCTTCTGAATGTTGTAGTCACTC 518005 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 ||| || || | || || | || ||||| || || || | |||||||||||| || | Sbjct 518006 AAA--GTACGGCCATCCTCCAACTGCTTACCAGCGAAAATAAGACGCTGTTGGTCGGGAG 518063 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | || |||||||| |||| || | || || | || |||||| |||| Sbjct 518064 GAATACCTTCCTTGTCCTGGATC-TTAGCCTTCACATTGTCGATCGTGTCTGAAGACTCC 518122 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||| ||| ||||| || || || | || || || || || ||||| Sbjct 518123 ACCTCCAGGGTGATCGTCTTGCCAGTAAGAGTCTTGACGAAGATTTGCAT 518172 >seq1 Length=1489072 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 ||||| || |||||||||||||| || ||||| || || || || || |||| || Sbjct 830630 CACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCCTC 830689 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 || || ||||| || || || | ||||||||||||||| || | ||||||||||| Sbjct 830690 CAGCTGCTTACCAGCGAAAATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTG 830749 Query 34617 GATCTT 34622 |||||| Sbjct 830750 GATCTT 830755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729250945203