Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20sympodialis_20[genbank_20GCA_5F001264925.1_202015-08- 11] 824 sequences; 7,546,902 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq812 107 2e-18 seq286 84.2 2e-11 >seq812 Length=24209 Score = 107 bits (118), Expect = 2e-18 Identities = 267/401 (67%), Gaps = 6/401 (1%) Strand=Plus/Plus Query 29988 CACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGG 30047 |||| | ||||| || | | || || || ||||| |||||| | ||| || |||| Sbjct 8519 CACGAAGAACTGGCAGAGAATATGACAAGGTGGAAGCGCCATGTTGTCCAGATCGATGGG 8578 Query 30048 GTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGC 30107 |||||| |||| || | ||||||| ||| |||||| || |||| | || | | | Sbjct 8579 GTTCCATGCGCTCAGTAAAATGCGCCGGTCCGTTGGGTTCGTCTTGATTTGTTCGATGAC 8638 Query 30108 GTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATG-TCCGTGTACTCTG 30166 || || ||||| || ||| ||| ||||| || ||| ||| |||| | Sbjct 8639 GTGGGCGAGTTGATCGACACCCTGACCCTGGTAGT-TGGTATCAGCATCCACATACTTCG 8697 Query 30167 CTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCT 30226 | || || || | ||| ||||| |||||||| || |||||||| || || | |||| Sbjct 8698 CGCCAAAGTGGCGCCATTGGAAGCCGTACACTGGACCCAGGTCACCTTCACGGCGGTGCC 8757 Query 30227 CGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCT 30286 | | || | ||| | || ||| || ||||||| ||| | |||||||| | ||| | Sbjct 8758 CAAGTCCGCGCTTCTGCAGAAATTCGGTGGAACCATTGCCATCCCAGATGTGTACAT--T 8815 Query 30287 TC--TCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCAC 30344 || || |||| || |||| ||| ||| | ||||||||||||||| |||| Sbjct 8816 TCGTTCACTGAGCCACTTAGAGTCCGTGCGCCCGGCAATGAACCACAGCAGCTCTTCCAG 8875 Query 30345 GACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30385 ||| | ||||||| | ||| || || | ||||||| Sbjct 8876 CACGCCACGGTAAAAGACACGCTTCGTTGTCAAAAGGGGAA 8916 >seq286 Length=4048 Score = 84.2 bits (92), Expect = 2e-11 Identities = 167/242 (69%), Gaps = 18/242 (7%) Strand=Plus/Plus Query 51963 GAGGGCTACCTGGACAGGGTGACTGTG---GACGTGGACTCTGACGGCAAGAAGCTCGTC 52019 ||||||||| ||||| |||| | | ||| |||||| ||| ||| ||||||| Sbjct 3133 GAGGGCTACGTGGACCAGGTGCTTATCAGCGACACGGACTCGGACC---AGACGCTCGTC 3189 Query 52020 AAGGTGAGGCTGAGGACCCCCAGGCAC-----CCAGAGATGGGCGACAAGTTTGCGTCG- 52073 |||| | || | || |||| | | |||||| ||||||||||||| ||||| Sbjct 3190 AAGGCG---CTCAT--CCGCCAGACGCGGCGGCCAGAGCTGGGCGACAAGTTCTCGTCGC 3244 Query 52074 TTCACGGCGCAAAAGGGGACGTGCGGAGCCGTCCTGACCCAGGAGGACATGCCCTTCGAC 52133 |||||| |||||||| ||| || | || | ||||||||| |||| ||| | Sbjct 3245 GCCACGGC-CAAAAGGGCGTGTGTGGTCTGATTGTGCCGCAGGAGGACCTGCCGTTCACC 3303 Query 52134 AAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCATCCAGGATGACC 52193 | ||||| | |||||| ||||||| |||||||||| ||| || || | ||||| Sbjct 3304 GACGACGGTATCCACCCCGACATCATCATGAACCCCCACGGCTTCCCGTCGCGTATGACG 3363 Query 52194 GT 52195 || Sbjct 3364 GT 3365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408613496457752