Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20sympodialis_20[genbank_20GCA_5F001264925.1_202015-08- 11] 824 sequences; 7,546,902 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq180 114 4e-20 seq213 93.3 1e-13 >seq180 Length=19533 Score = 114 bits (126), Expect = 4e-20 Identities = 237/350 (68%), Gaps = 12/350 (3%) Strand=Plus/Minus Query 254954 ACGAACGGACGGAGCGGCGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGC 255013 |||||||| |||| ||| ||| | || ||| |||| |||| ||||||| ||| ||| Sbjct 13773 ACGAACGGTGTGAGCAACGGTATTGTGCCCATGCTCCGCGTGTACAACAACACGGCGCGC 13714 Query 255014 TACGTCGATCAAGGGGGCGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGG 255073 ||||| || || || ||| ||| ||||| || || || | |||||||||||||||||| Sbjct 13713 TACGTGGACCAGGGCGGCAACAAGCGCCCGGGCGCCTTTGCGATCTACCTGGAGCCGTGG 13654 Query 255074 CACGCCGAC---ATTGAACGGTTTTTACTGCTGTCCGACAAGACC---GGCACCGAGGAG 255127 ||| | ||| ||||| |||| || | | || ||||| | |||| ||||| Sbjct 13653 CACTCGGACGTTTTTGAA-----TTTATTGATCTGCG-CAAGAACCATGGCAAGGAGGAA 13600 Query 255128 CTGATCGCCCGCGACATCTACACCGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTG 255187 || ||| |||||| | | | || | ||| ||||||||| ||||| || || Sbjct 13599 GTGCGCGCGCGCGACCTGTTCCTGGCGCTGTGGATTCCCGATCTGTTCATGCGCCGTGTC 13540 Query 255188 GAACGAGACGAGACCTGGAGCCTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCT 255247 |||| ||| |||| || ||||| ||| | | || ||||| | |||| Sbjct 13539 GAACAGAACGGCGACTGGTCGCTGATGTGCCCCGCCGAGTGCCCAGGTCTGGCTGACTGC 13480 Query 255248 TGGGGTGACGAGTTTGAAAAACTGTATCTGGAGTACGAGCGTGCCGGCCG 255297 | || || |||||||| ||||| | |||||||||| | ||||| Sbjct 13479 TATGGCGAGGAGTTTGATGCTCTGTACGAGAAGTACGAGCGCGAGGGCCG 13430 >seq213 Length=9698 Score = 93.3 bits (102), Expect = 1e-13 Identities = 394/607 (65%), Gaps = 19/607 (3%) Strand=Plus/Plus Query 443270 GCGGTTCGTCTTGTTCCCCGTTCAGCATCC-CGACATCTACGACATGTACAA-ACGACAA 443327 ||| || ||| | ||||| | || || || ||| |||| | |||||||| | | | Sbjct 2001 GCGCTTTGTCCTCTTCCC-GATCCGCTACCACGAGATCTGGCAGATGTACAAGAAGGCC- 2058 Query 443328 GTGGCCCAGTTTTGGACCATGGAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAAC 443387 | |||| ||| |||||| |||||||| || ||||| ||||||||| ||| ||| || Sbjct 2059 GAGGCCTCGTTCTGGACCGCCGAGGAGATGGACCTCTCGAAGGACTTGCACGACTGGGAC 2118 Query 443388 GAACGACT-ATCTAGCCATGAACGCGATTTCTTCAAATGCATCTTGGCCTTCTTTGCACC 443446 | || | | | | | |||| ||| | || | | | || ||||||||||||| | Sbjct 2119 CACCGCATGAACGA-CAATGAGCGCCACTTTGTGAGCCACGTCCTGGCCTTCTTTGCTGC 2177 Query 443447 GAGCGACGGTATCGTCGGTGAGAATCTGGTGACGCGTTTCTACGAAATGGTAGTGTACAC 443506 |||||||||||| ||||| ||||| ||| ||| || ||| | | | Sbjct 2178 TTCGGACGGTATCGTCAACGAGAACCTGGTCGAGCGCTTCAGCGCCGAGGTGCAGGCCGC 2237 Query 443507 CGAGGCCCGCTACTTCTACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTA 443566 ||||||||||| |||||||| ||||| | ||||||||||| ||| | ||| || Sbjct 2238 CGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCGGAGACGTA 2297 Query 443567 CAGTCAGTTGATCAAGACAC-TAATTCCGAACGAAGACGAACAGCG---GTCCATCTTCT 443622 | | | ||| ||||| || |||| ||| || ||||| || ||||| Sbjct 2298 CTCGCTCCTCATC--GACACGTACATCCG--CGAGCCGGAGCAGCGTGAGTTTCTCTTCA 2353 Query 443623 CATCGTTCATGACCACGCCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGG--CT 443680 | || ||| | || | | ||| | ||| | ||||| | ||| || Sbjct 2354 ACGCTATCGAGACGATCCCCGTCGTCAAGCAGAAGGCCGAGTGGGCCCTGCGCTGGATCT 2413 Query 443681 CGAACGAGAAAATCTCAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACT 443740 || || | ||| ||| ||||| || || || ||||| | ||||| || | Sbjct 2414 CGGACAGGCGCGCCTC--GTTCTCGGAGCGCCTTGTGGCCTTTGCCGCCGTCGAGGGCAT 2471 Query 443741 GTTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACG 443800 || ||| ||| | || ||||||||||||||| | || ||||| || || |||| | Sbjct 2472 CTT-TTTCTCGGGCTCGTTTGCCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTG 2530 Query 443801 GTCTGACCTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCT 443860 ||||| | || ||||| || ||| || || ||||| |||| |||||| |||| Sbjct 2531 GTCTGTCGTTCTCGAACGAGCTCATCTCGCGCGATGAGGGCCTGCACACCGACTTTGCCT 2590 Query 443861 GTCTTCT 443867 |||| || Sbjct 2591 GTCTCCT 2597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588319231142680