Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20sympodialis_20[genbank_20GCA_5F900149135.1_202017-01- 09] 8 sequences; 7,732,420 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1 123 3e-23 seq4 118 1e-21 seq5 95.1 1e-14 >seq1 Length=1507387 Score = 123 bits (136), Expect = 3e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| |||||| |||| ||||||||||| ||||| ||||| || || || || | Sbjct 1005600 ACGCAGCACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGCTAAGCGTGCGGCC 1005541 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || || || || || ||||| ||||| | || | || |||||| Sbjct 1005540 ATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGTTGGTCCGGAGGAATGCCCTCCTT 1005481 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || |||| | | | |||||| ||| || || |||| ||||| Sbjct 1005480 GTCCTGGATCTTGGCCTTGACATTGTCAATCGTGTCCGACGACTCGACCTCGAGGGTGAT 1005421 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || || ||||| |||||||||||||| Sbjct 1005420 CGTCTTGCCAGTGAGGGTCTTGACAAAGATTTGCAT 1005385 Score = 122 bits (134), Expect = 1e-22 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| |||||| |||| ||||||||||| ||||| ||||| || || || || | Sbjct 1005372 ACGCAGCACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGCTAAGCGTGCGGCC 1005313 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || || || || || ||||| ||||| | || | || |||||| Sbjct 1005312 ATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGTTGGTCCGGAGGAATGCCCTCCTT 1005253 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || |||| | | | |||||| ||| || || |||| ||||| Sbjct 1005252 GTCCTGGATCTTGGCCTTGACATTGTCAATCGTGTCCGACGACTCGACCTCGAGGGTGAT 1005193 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || ||||| || || ||||| ||||| ||||||||| Sbjct 1005192 CGTCTTGCCAGTGAGGGTCTTAACAAAAATTTGCATT 1005156 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| |||||| || | ||||||||||| ||||| || || || || || || | Sbjct 1005828 ACGCAGCACCAAGTGTAGCGTGCTCTCCTTCTGAATGTTATAGTCGCTAAGCGTGCGGCC 1005769 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || || || || || ||||| ||||| | || | || |||||| Sbjct 1005768 ATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGTTGGTCCGGAGGAATGCCCTCCTT 1005709 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || |||| | | | |||||| ||| || || |||| ||||| Sbjct 1005708 GTCCTGGATCTTGGCCTTGACATTGTCAATCGTGTCCGACGACTCGACCTCGAGGGTGAT 1005649 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || || ||||| |||||||||||||| Sbjct 1005648 CGTCTTGCCAGTGAGGGTCTTGACAAAGATTTGCAT 1005613 >seq4 Length=1203127 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| ||||||||||| ||||| ||||| || ||| || || |||| || |||||| Sbjct 406591 TGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCGAGCTGC 406532 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 ||||||||||| || || ||||| ||||| | || | || |||||||||| ||| || Sbjct 406531 TTACCAGCGAAGATCAGACGCTGTTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTG 406472 Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160 |||| | | | |||||| ||| || || || | || || || ||||| || Sbjct 406471 GCCTTGACATTGTCGATCGTGTCCGACGACTCGACCTCAAGGGTAATCGTCTTGCCAGTC 406412 Query 43161 AGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || ||||||||||| Sbjct 406411 AGAGTCTTGACGAAGATTTGCAT 406389 >seq5 Length=687504 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||| | || | ||||||||||| || || ||||| || ||| || || | Sbjct 231874 CGCAGCACAAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCA 231933 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || ||||| || || ||||| ||||| | || | | ||||||| Sbjct 231934 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGAGGGATACCCTCCTTG 231993 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || || | || | | ||||||| || ||||| |||| ||||| Sbjct 231994 TCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATC 232053 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || || ||||| || || | |||||| Sbjct 232054 GTCTTCCCGGTAAGGGTCTTGACGAACACTTGCAT 232088 Score = 86.0 bits (94), Expect = 7e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| || | |||| ||||||||||| || |||||||| ||| ||| || || | Sbjct 142073 ACGCAGGACAAGGTGCAGCGTGCTCTCCTTCTGGATATTGTAGTCACTCAGGGTACGTCC 142014 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || || ||||| || || || || || ||||||||||| | ||| | || |||||| Sbjct 142013 ATCCTCCAGTTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTT 141954 Query 43088 GTCCATGATTTT 43099 |||| ||| || Sbjct 141953 GTCCTGGATCTT 141942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817542818240