Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20sympodialis_20[genbank_20GCA_5F900149135.1_202017-01- 09] 8 sequences; 7,732,420 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1 102 6e-17 seq5 96.9 3e-15 >seq1 Length=1507387 Score = 102 bits (112), Expect = 6e-17 Identities = 158/222 (71%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || |||||||||| || |||||||||||||||||||||||||| || || || || || Sbjct 1005602 AGACGCAGCACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GCTAAGCGTGCG 1005544 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | || |||| |||||||||||||| ||||| ||||| || ||| || | || ||| Sbjct 1005543 GCCATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGTTGGTCCGGAGGAATGCCCTC 1005484 Query 34029 TTTGTCCATAATTTTTTGCTT---AATGGAACTCACACTATCAGTAGATTCGCATTCGAC 34085 |||||| || || ||| | || | || | || | || ||| |||| Sbjct 1005483 CTTGTCCTGGATCTTGGCCTTGACATTGTCAATC---GTGTCCGACGACTCGACCTCGAG 1005427 Query 34086 CGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || || || || || || || |||||||||||||| Sbjct 1005426 GGTGATCGTCTTGCCAGTGAGGGTCTTGACAAAGATTTGCAT 1005385 Score = 100 bits (110), Expect = 2e-16 Identities = 100/127 (79%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || |||||||||| || |||||||||||||||||||||||||| || || || || || Sbjct 1005374 AGACGCAGCACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GCTAAGCGTGCG 1005316 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | || |||| |||||||||||||| ||||| ||||| || ||| || | || ||| Sbjct 1005315 GCCATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGTTGGTCCGGAGGAATGCCCTC 1005256 Query 34029 TTTGTCC 34035 |||||| Sbjct 1005255 CTTGTCC 1005249 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/222 (71%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || |||||||||| || ||||||||||||||||||||||| || || || || || || Sbjct 1005830 AGACGCAGCACCAAGTGTAGCGTGCTCTCCTTCTGAATGTTATAGTC-GCTAAGCGTGCG 1005772 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | || |||| |||||||||||||| ||||| ||||| || ||| || | || ||| Sbjct 1005771 GCCATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGTTGGTCCGGAGGAATGCCCTC 1005712 Query 34029 TTTGTCCATAATTTTTTGCTT---AATGGAACTCACACTATCAGTAGATTCGCATTCGAC 34085 |||||| || || ||| | || | || | || | || ||| |||| Sbjct 1005711 CTTGTCCTGGATCTTGGCCTTGACATTGTCAATC---GTGTCCGACGACTCGACCTCGAG 1005655 Query 34086 CGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || || || || || || || |||||||||||||| Sbjct 1005654 GGTGATCGTCTTGCCAGTGAGGGTCTTGACAAAGATTTGCAT 1005613 >seq5 Length=687504 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| ||||| || || || ||||||||||||||||| || ||||| || Sbjct 142085 ACCACCGCGCAGACGCAGGACAAGGTGCAGCGTGCTCTCCTTCTGGATATTGTAGTCACT 142026 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || | || |||| ||||||||| ||||| |||||||||||||| ||| ||| Sbjct 142025 CAGGGTACGTCCATCCTCCAGTTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGG 141966 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 141965 AATGCCCTCCTTGTCC 141950 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| |||||||| || || ||||||||||||||||| |||||||| || || Sbjct 231861 ACCACCACGCAGGCGCAGCACAAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTC-GC 231919 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | || || | || |||| ||||||||||| || ||||||||||| || ||| | Sbjct 231920 TCAGCGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGAG 231979 Query 34019 GCACGCTCTCTTTGTCC 34035 | | | ||| |||||| Sbjct 231980 GGATACCCTCCTTGTCC 231996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397062361286416