Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20sympodialis_20[genbank_20GCA_5F900149155.1_202017-01- 09] 8 sequences; 7,757,162 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1 100 2e-16 seq5 84.2 2e-11 >seq1 Length=1515123 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || || ||||||||||| ||||||||||| || || || || || | ||||||||||| Sbjct 1006385 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GCTAAGCGTGCGGCCATCCTCCAGCTG 1006327 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| | | || | |||||| || ||| || | || ||||||||| ||| || Sbjct 1006326 CTTGCCGGCAAAGATCAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTT 1006267 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | || || || | ||||| ||||| || || || || ||||| Sbjct 1006266 GGCCTTGACATTGTCAATCGTGTCCGACGACTCGACCTCGAGGGTGATCGTCTTGCCGGT 1006207 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 |||||| || ||||| || ||||| Sbjct 1006206 GAGAGTCTTGACAAAGATTTGCAT 1006183 Score = 98.7 bits (108), Expect = 8e-16 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || || ||||||||||| ||||||||||| || || || || ||| | ||||||||||| Sbjct 1005929 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GCTAAGCGTGCGCCCATCCTCCAGCTG 1005871 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| | |||| | |||||| |||||| || | || ||||||||| ||| || Sbjct 1005870 CTTGCCGGCAAAAATCAGACGCTGTTGATCCGGAGGAATACCCTCCTTGTCCTGAATCTT 1005811 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | || || || | || || ||||| || || || || || || Sbjct 1005810 GGCCTTGACGTTGTCAATCGTGTCCGACGATTCGACCTCGAGAGTGATCGTCTTGCCAGT 1005751 Query 48703 GAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||| || || ||||| || ||||| ||| Sbjct 1005750 GAGGGTCTTAACAAAGATTTGCATTGTG 1005723 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/208 (71%), Gaps = 10/208 (5%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || || ||||||||||| ||||||||||| || || || || ||| | ||||||||||| Sbjct 1006157 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GCTAAGCGTGCGCCCATCCTCCAGCTG 1006099 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| | |||| |||||||| |||||| || | | ||||||||| || || Sbjct 1006098 CTTGCCGGCAAAAATCAAACGCTGTTGATCCGGAGGAATGCCCTCCTTGTCCTGGATCTT 1006039 Query 48643 CTGCTTGATAGACG----CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTAC 48698 ||| | |||| | || || || | || || |||| || || || || | Sbjct 1006038 -GGCT---TTGACGTTGTCAATCGTGTCCGACGATTCGACTTCGAGAGTGATCGTCTTGC 1005983 Query 48699 CGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||||| || ||||| || ||||| Sbjct 1005982 CGGTGAGAGTCTTGACAAAGATTTGCAT 1005955 >seq5 Length=679138 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/234 (69%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || || ||||||||||| || |||||||| || || | || || | ||||||||||| Sbjct 231797 TGGAGCGTGCTCTCCTTCTGGATGTTGTAGTC-GCTCAGCGTGCGACCATCCTCCAGCTG 231855 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | ||||| || ||| || | || ||||||||| || || Sbjct 231856 CTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTT 231915 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | | || || |||| ||||||| ||||| || || || || ||||| Sbjct 231916 GGCCTTCACATTCTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTCCCGGT 231975 Query 48703 GAGAGTTTTCACAAAAATCTGCATCGTGTCT--TGATCGAAGAAAGAGTGATGT 48754 || || || || || | ||||| || || | | | || |||| ||| ||| Sbjct 231976 AAGGGTCTTGACGAACACTTGCATGGTAACTGCTAACCAAACAAAGTGTGGTGT 232029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421251158928008