Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20sympodialis_20[genbank_20GCA_5F900149155.1_202017-01- 09] 8 sequences; 7,757,162 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq4 156 9e-33 seq5 138 3e-27 seq1 134 3e-26 >seq4 Length=1215465 Score = 156 bits (172), Expect = 9e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || ||| ||| || ||||| ||||| ||| || || | || || ||| Sbjct 412021 ACAAGGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCG 411962 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| |||||||| || || |||||||| ||||| ||||| || ||||| || Sbjct 411961 AGCTGCTTACCAGCGAAGATCAGACGCTGTTGGTCCGGAGGGATGCCCTCCTTGTCCTGG 411902 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || || |||||||| || || |||||||||| |||||| Sbjct 411901 ATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCGACCTCAAGGGTAATCGTCTTG 411842 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| ||| || ||||| | |||||| Sbjct 411841 CCAGTCAGAGTCTTGACGAAGATTTGCAT 411813 >seq5 Length=679138 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || ||| ||| || || || ||||| ||| || || | ||||| || Sbjct 231791 ACAAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCATCCTCC 231850 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || |||||||| ||||| || || || ||||| || Sbjct 231851 AGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGAGGGATACCCTCCTTGTCCTGG 231910 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || ||||| || ||||| ||| ||||| || ||||| | |||||| Sbjct 231911 ATCTTGGCCTTCACATTCTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTC 231970 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || |||||||||||||| Sbjct 231971 CCGGTAAGGGTCTTGACGAACACTTGCAT 231999 >seq1 Length=1515123 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||| ||| || ||||| ||||| ||| ||| || | |||||| || Sbjct 1006163 ACCAGGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGCTAAGCGTGCGCCCATCCTCC 1006104 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || || || | || ||||| || ||||||||||| || ||||| || Sbjct 1006103 AGCTGCTTGCCGGCAAAAATCAAACGCTGTTGATCCGGAGGAATGCCCTCCTTGTCCTGG 1006044 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||||| ||||| |||||||| ||| ||||| || || | |||||| Sbjct 1006043 ATCTTGGCTTTGACGTTGTCAATCGTGTCCGACGATTCGACTTCGAGAGTGATCGTCTTG 1005984 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| || || || | |||||| Sbjct 1005983 CCGGTGAGAGTCTTGACAAAGATTTGCAT 1005955 Score = 116 bits (128), Expect = 8e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 194949 CTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAA 195008 ||| || ||||| ||||| ||| || || | ||||| || |||||||| || || || Sbjct 1006602 CTCCTTCTGAATGTTGTAGTCGCTGAGCGTGCGACCATCCTCCAGCTGCTTGCCAGCAAA 1006543 Query 195009 GATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTT 195068 || | || |||||||| ||||||||||| || ||||| || || || ||||||||| Sbjct 1006542 AATCAAACGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 1006483 Query 195069 CTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTAC 195128 ||||| |||||||| ||| || || || || | |||||| || || | || || || Sbjct 1006482 GTCAATCGTGTCCGACGATTCGACCTCGAGAGTGATCGTCTTGCCAGTGAGGGTCTTGAC 1006423 Query 195129 GAACACTTGCAT 195140 || | |||||| Sbjct 1006422 AAAGATTTGCAT 1006411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481486278136