Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20sympodialis_20[genbank_20GCA_5F900149175.1_202017-01- 09] 8 sequences; 7,729,037 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1 102 6e-17 seq5 96.9 3e-15 >seq1 Length=1509448 Score = 102 bits (112), Expect = 6e-17 Identities = 158/222 (71%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || |||||||||| || |||||||||||||||||||||||||| || || || || || Sbjct 1006192 AGACGCAGCACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GCTAAGCGTGCG 1006134 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | || |||| |||||||||||||| ||||| ||||| || ||| || | || ||| Sbjct 1006133 GCCATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGTTGGTCCGGAGGAATGCCCTC 1006074 Query 34029 TTTGTCCATAATTTTTTGCTT---AATGGAACTCACACTATCAGTAGATTCGCATTCGAC 34085 |||||| || || ||| | || | || | || | || ||| |||| Sbjct 1006073 CTTGTCCTGGATCTTGGCCTTGACATTGTCAATC---GTGTCCGACGACTCGACCTCGAG 1006017 Query 34086 CGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || || || || || || || |||||||||||||| Sbjct 1006016 GGTGATCGTCTTGCCAGTGAGGGTCTTGACAAAGATTTGCAT 1005975 Score = 100 bits (110), Expect = 2e-16 Identities = 100/127 (79%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || |||||||||| || |||||||||||||||||||||||||| || || || || || Sbjct 1005964 AGACGCAGCACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GCTAAGCGTGCG 1005906 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | || |||| |||||||||||||| ||||| ||||| || ||| || | || ||| Sbjct 1005905 GCCATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGTTGGTCCGGAGGAATGCCCTC 1005846 Query 34029 TTTGTCC 34035 |||||| Sbjct 1005845 CTTGTCC 1005839 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/222 (71%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || |||||||||| || ||||||||||||||||||||||| || || || || || || Sbjct 1006420 AGACGCAGCACCAAGTGTAGCGTGCTCTCCTTCTGAATGTTATAGTC-GCTAAGCGTGCG 1006362 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | || |||| |||||||||||||| ||||| ||||| || ||| || | || ||| Sbjct 1006361 GCCATCCTCCAGCTGCTTGCCGGCAAAAATCAGACGCTGTTGGTCCGGAGGAATGCCCTC 1006302 Query 34029 TTTGTCCATAATTTTTTGCTT---AATGGAACTCACACTATCAGTAGATTCGCATTCGAC 34085 |||||| || || ||| | || | || | || | || ||| |||| Sbjct 1006301 CTTGTCCTGGATCTTGGCCTTGACATTGTCAATC---GTGTCCGACGACTCGACCTCGAG 1006245 Query 34086 CGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || || || || || || || |||||||||||||| Sbjct 1006244 GGTGATCGTCTTGCCAGTGAGGGTCTTGACAAAGATTTGCAT 1006203 >seq5 Length=687159 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| ||||| || || || ||||||||||||||||| || ||||| || Sbjct 141819 ACCACCGCGCAGACGCAGGACAAGGTGCAGCGTGCTCTCCTTCTGGATATTGTAGTCACT 141760 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || | || |||| ||||||||| ||||| |||||||||||||| ||| ||| Sbjct 141759 CAGGGTACGTCCATCCTCCAGTTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGG 141700 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 141699 AATGCCCTCCTTGTCC 141684 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| |||||||| || || ||||||||||||||||| |||||||| || || Sbjct 231726 ACCACCACGCAGGCGCAGCACAAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTC-GC 231784 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | || || | || |||| ||||||||||| || ||||||||||| || ||| | Sbjct 231785 TCAGCGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGAG 231844 Query 34019 GCACGCTCTCTTTGTCC 34035 | | | ||| |||||| Sbjct 231845 GGATACCCTCCTTGTCC 231861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397062361286416