Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2 183 3e-41 >seq2 Length=3834998 Score = 183 bits (202), Expect = 3e-41 Identities = 570/867 (66%), Gaps = 23/867 (3%) Strand=Plus/Minus Query 16664 ACACCCATTCTTTG-GTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAG 16722 || ||||| ||||| ||| ||| ||| ||| || || |||||||| || || || Sbjct 1008057 ACGCCCAT-CTTTGAGTATTCGGCAACCTTTTTCTCAAAGAAGTTAGTCTTTCCGGTTAA 1007999 Query 16723 AGATATATTCTCCATGAAATCAAAAGGATTAGTAGC--TGAAAATATTTTAGAGTACCCC 16780 ||| || |||||||| |||| || || || || || || | |||| | ||||| Sbjct 1007998 AGAGATGTTCTCCATCCAATCGAATGGGTTGGTTGCATTGTATGCCTTTTCGT-TACCCA 1007940 Query 16781 AGTTCGGCGATTAATCTATCCGCTACA-AATTCTATATATTGGCACATTAATTCGCAGTT 16839 | | | || | | ||| || ||| ||||| || ||||| ||||| |||| | |||| Sbjct 1007939 AAGCCACCAATAGA-CGATCAGC-ACAGAATTCAATGTATTGACACATCAATTTGGAGTT 1007882 Query 16840 CATTCCTAT-AAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCG 16898 |||||| || ||| | | | || ||| || || || || | ||| || || || | Sbjct 1007881 CATTCCGATTAAGTTGCATGGTAA-AGCATCAGTTAAGAAACTTTGTTCGATTGAGACAG 1007823 Query 16899 CTTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAG---ATGTTTAA 16955 |||| | ||||| | ||| || ||| | | | ||| | ||| | | Sbjct 1007822 CTTCTGTGATAATCTTGTTCACTGTATCA--GGATGA-GCGCGCTTACGCAAATGGCTGA 1007766 Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || |||||||||||| ||||| || || ||||||||||| | ||| || || | Sbjct 1007765 ACAACAAACATGCGAAATCAGTGTGTAAACCTTCATCTCTGCTGATCAATTCATTGGAGA 1007706 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 ||||||| ||||||||| ||| || ||||| | ||| || || ||||| || ||| Sbjct 1007705 ATGTCAAACCGGGCATCAATCCACGCTTCTTGAGCCAGAAGATACTTGCGAATGAACCAC 1007646 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 ||||| ||||| || |||| ||||| |||| || ||||| || | || || | Sbjct 1007645 TGAAGAAGATACCTTCAACGGCAGCAAAAGCGACCAAACGTTCAGCAAATGTGGCCCGCT 1007586 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 ||| | |||||| || | |||| || || ||| || | | || ||||| | Sbjct 1007585 TGTCAGAAATCCACTTTAGTGCCCAATCTGCCTTTGTTTTGACGACTGGAATTGTTTCAA 1007526 Query 17196 TGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGC 17255 | || | || || ||| || | |||| || || ||||| || | | Sbjct 1007525 TAGCATCGAACAAGAACTCGCGTTGATCAGGGTCACGGATGTATGTATCAATCAACAAAG 1007466 Query 17256 TGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTT 17315 ||| |||| ||||| ||||| ||||| || || || || || ||||||| |||| Sbjct 1007465 AGTAAGTTTCTGAGTGAATGTTTTCCATCATGATTTGGAAACCATAGAAGCATCTTGCTT 1007406 Query 17316 CCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGC 17375 | ||| ||||||||| || ||||||||| | | ||||| || ||||| || || Sbjct 1007405 CTGCTGCTTGAACTTCTCCGCTGAATCGTTCGACCAAGTTTTCATTGACGATACCATCAG 1007346 Query 17376 TCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAAC-- 17433 ||||| || || ||||| | || ||||||| ||||| || ||| Sbjct 1007345 AAGCGGCAAAGAATGCCAAAACGTGAGAGATGAAATGACGTTCGT--TGTCGTTCAACTT 1007288 Query 17434 ---GCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGC 17490 | ||| || | ||||||||||| | ||| | ||||| | |||||| ||| ||| Sbjct 1007287 GTTGTCCCAATCGTGCAAATCTTTGGACAAATCAATCTCTTCTGCGGTCCAGAAAGAAGC 1007228 Query 17491 CACTGCCTTTTTATACATATTCCAAAT 17517 |||| ||||| ||||| | |||||| Sbjct 1007227 TTCTGCTTTTTTGTACATTTGCCAAAT 1007201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545224779440