Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2 217 2e-51 >seq2 Length=3834998 Score = 217 bits (240), Expect = 2e-51 Identities = 581/871 (67%), Gaps = 23/871 (3%) Strand=Plus/Minus Query 15898 AGCAACACCCATTCTTTG-GTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCT 15956 ||| || ||||| ||||| ||| || ||| ||| || ||||||||||| ||||| Sbjct 1008061 AGCTACGCCCAT-CTTTGAGTATTCGGCAACCTTTTTCTCAAAGAAGTTAGTCTTTCCGG 1008003 Query 15957 CTAAAGATATATTTTCCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACC 16016 |||||| || || ||||| |||| || || || || || || ||| || | Sbjct 1008002 TTAAAGAGATGTTCTCCATCCAATCGAATGGGTTGGTTGCATTGTATGCCTTTTCGTTAC 1007943 Query 16017 CCAGTTCCGTAACTAATCTATCTGCTACA-AATTCTATATATTGACACATTAAGTCGCAA 16075 ||| || | || | ||| || ||| ||||| || ||||||||||| || | | | Sbjct 1007942 CCAAAGCCACCAATAGACGATCAGC-ACAGAATTCAATGTATTGACACATCAATTTGGAG 1007884 Query 16076 TTAATTCCTAT-AAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAAC 16134 || ||||| || |||| | | | || ||| | ||||| || |||||| || || Sbjct 1007883 TTCATTCCGATTAAGTTGCATGGTAA-AGCATCAGTTAAGAAACTTTGTTCGATTGAGAC 1007825 Query 16135 CGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATG-GTTTAGG----TGT 16189 |||||| | || || | | | || || |||| | || | | ||| | || Sbjct 1007824 AGCTTCTGTGATAATCTTGTTCACT---GTATCAG--GATGAGCGCGCTTACGCAAATGG 1007770 Query 16190 TTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTG 16249 | |||| | ||| ||||| || |||| ||||| ||||||||||| | ||| ||| Sbjct 1007769 CTGAACAACAAACATGCGAAATCAGTGTGTAAACCTTCATCTCTGCTGATCAATTCATTG 1007710 Query 16250 GAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGAC 16309 || || || || || ||||| ||| || ||||| | |||||| || || ||||| Sbjct 1007709 GAGAATGTCAAACCGGGCATCAATCCACGCTTCTTGAGCCAGAAGATACTTGCGAATGAA 1007650 Query 16310 CCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCA 16369 || ||||| ||||| ||||| | |||||||||| || ||||| || | || || Sbjct 1007649 CCACTGAAGAAGATACCTTCAACGGCAGCAAAAGCGACCAAACGTTCAGCAAATGTGGCC 1007590 Query 16370 TCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCA-TCGT 16428 || | | |||||| || || |||| || || ||| ||||| | | | | || Sbjct 1007589 CGCTTGTCAGAAATCCACTTTAGTGCCCAATCTGCCTTT-GTTTTGACGACTGGAATTGT 1007531 Query 16429 TTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAG 16488 ||| || || | ||||| ||| || | | || || || |||||||||| Sbjct 1007530 TTCAATAGCATCGAACAAGAACTCGCGTTGATCAGGGTCACGGATGTATGTATCAATCAA 1007471 Query 16489 TAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCG 16548 ||| ||| |||||||||| ||||| || || || || || ||||||||||||| Sbjct 1007470 CAAAGAGTAAGTTTCTGAGTGAATGTTTTCCATCATGATTTGGAAACCATAGAAGCATCT 1007411 Query 16549 AGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACC 16608 || || ||| ||| ||||| || |||||||| ||| ||| ||||| |||||||| Sbjct 1007410 TGCTTCTGCTGCTTGAACTTCTCCGCTGAATCGTTCGACCAAGTTTTCATTGACGATACC 1007351 Query 16609 GTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGT--A 16666 ||| || ||||| || ||||| | ||| ||||||| ||||| | || | Sbjct 1007350 ATCAGAAGCGGCAAAGAATGCCAAAACGTGAGAGATGAAATGACGTTCGT-TGTCGTTCA 1007292 Query 16667 A--GAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGC 16724 | | | |||||| | ||||||||||| | ||| | ||||||| ||||| || Sbjct 1007291 ACTTGTTGTCCCAATCGTGCAAATCTTTGGACAAATCAATCTCTTCTGCGGTCCAGAAAG 1007232 Query 16725 TAGCCACTGCCTTTTTATACATTTTCCAAAT 16755 ||| |||| ||||| ||||||| |||||| Sbjct 1007231 AAGCTTCTGCTTTTTTGTACATTTGCCAAAT 1007201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511414029224560