Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq4 134 1e-26 >seq4 Length=1961900 Score = 134 bits (148), Expect = 1e-26 Identities = 275/403 (68%), Gaps = 7/403 (2%) Strand=Plus/Plus Query 101871 AAAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCC 101930 ||||||||| || | ||||||||| || || |||| || | | |||| ||||| Sbjct 1780363 AAAATTGACAAAACATATGACAAGGTGGTAATGCCATCTTTGTTAAATCTGCCGGATTCC 1780422 Query 101931 AAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTT 101990 | |||| || | || |||| |||||| || || |||| || ||||||||| | | Sbjct 1780423 ATGCACTCAAAATTATTCTTCGATCTGTTGGATTATTTTTAATTTTATCAATCACTTCTC 1780482 Query 101991 TTAATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACACCTTTA-TATTCTGCTCCG 102049 ||||||| ||||| |||| |||| ||||||| | ||| ||| ||||||||||| Sbjct 1780483 TTAATTGATCAACACCTTGTCCTGTATAATCATCATCG-CACGTTTTGTATTCTGCTCCA 1780541 Query 102050 AAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCT--TCATCTCTGTCATAAA 102107 ||||| ||||| ||||| || || || ||||| ||||| ||| || ||| || | || Sbjct 1780542 AAATGTCTCCATTGAAAGCCGTATACTGGTCCTAGATCACCTGCTCGTCTATGCC--CAA 1780599 Query 102108 AACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTG 102167 || || || |||||| || |||||| |||||||||| || | | | | Sbjct 1780600 GTCCTCGTGATTCCAAAAATTCCTTACTTCCATTGCCATCCCAAATATGAATGTCTTTTT 1780659 Query 102168 CTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACAC 102227 | | || | || ||||| ||| | |||||| || | ||| || | ||||| Sbjct 1780660 CCGTTAACAATTGCGAATCAGTCTTTCCGGCAACAAACCATAATAATTCCTCCAAAACAC 1780719 Query 102228 CTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGG-AAATTCAT 102269 |||| |||||| ||||| || || | || || ||| |||| Sbjct 1780720 CTCTGGTAAATACCCTCTTGGTTGTAAGTAGAGGTAAAGTCAT 1780762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361250944640558