Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2 302 5e-77 >seq2 Length=3834998 Score = 302 bits (334), Expect = 5e-77 Identities = 1395/2179 (64%), Gaps = 61/2179 (3%) Strand=Plus/Plus Query 52808 GTGAATTGAATGGGAGCGGATGCG---GGTTTCGTACGTAGATAGTACATTCCCGTTTTT 52864 ||||||||||| |||| |||| ||| | ||||||| || || ||||||| ||| Sbjct 3099258 GTGAATTGAAT---AGCGTTTGCGGCAGGTCTTGTACGTAAGTAATAAGTTCCCGTCTTT 3099314 Query 52865 AGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGC- 52923 | || |||||||||| || ||||||||||| | || || || | | | ||| Sbjct 3099315 AATCCTTTCTTCCATCCGTAGAAGTGCATACTTGTCAATT--GACCAAAT-GTAGGTGCG 3099371 Query 52924 --TATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 52981 || |||||| |||| | ||||||||| ||||| ||||| | || || ||||| Sbjct 3099372 CTTAAATGGATGTTCAAACTTTGACTTTGGCAAATGAATGCTCCACGATCGGCTGCCATA 3099431 Query 52982 TTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCT 53041 | ||||| | ||||| |||||||||| || || || | || || ||||| ||| Sbjct 3099432 TCAATGATTGCTTTTTGACTGATTTCCCAAACGGTCTTGTACAATCTTTTGATATCATCT 3099491 Query 53042 GGAAGGTTTGTA---TTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCA 53098 |||| || | || ||||| |||||||||| | || || || ||||| || Sbjct 3099492 GGAATTCCTGGAACGTTTTGAATTGATCCACCATGAGCAATGATTCTGTTCTTCATTGTT 3099551 Query 53099 TCATTCCATAATTTTCTCTCGGTTAAAACTC-TAAGGA-GATGCGGATTAACTACTTGAA 53156 || ||||| | | || || | ||| | || || ||||| ||||| | Sbjct 3099552 TCTGACCATAGTCCTTGTTCCACCAATGTACGTAATAACCAT--GGGTTAACAACTTGGA 3099609 Query 53157 ATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCAT 53216 ||||||| | || || | || ||||| || || ||| | ||||| | | |||| Sbjct 3099610 ATTCTCCTGCTAACACACGCCTTGTGTAGATGTTTGAGGTGAAAGGTTCAAAGCATTCAT 3099669 Query 53217 TATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTC 53276 | ||| ||||||||| || || ||||| ||||| ||||||| ||||| ||| | Sbjct 3099670 TGAATCCTAAAATTTGACTGGTAGAAGCAGTAGGCATGGGTGCCAACAATAGCGAATTAC 3099729 Query 53277 TAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTC---CCAATTCCAAAGATCCGA 53331 | |||| || |||| || || ||||||| |||| ||| ||||| ||||| || Sbjct 3099730 GTAAACCG--TGCTCTGCAATCTTTTCTTTTA---GTTCAGACCAGTTCCATAGATCGGA 3099784 Query 53332 CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATA 53391 ||| || ||||| || ||||| || ||||| | || Sbjct 3099785 TGGTGTTACGTTCCACATGTCATATTGTAATTCTCCCTTACTTGCAGGGGATCCCTCGTA 3099844 Query 53392 TGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATA 53451 ||| || |||| |||| | | ||| | ||| ||||| ||| || ||| | | || Sbjct 3099845 TGTTTCATATGTTCCTAATTCTTTAGCCAATTCGCAACTTCTCTCCAAAGCAGCATGGTA 3099904 Query 53452 AATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATT 53511 || ||||| ||||| | || | | ||||||| | ||| || || | Sbjct 3099905 GATCGTTTCAAAGATTTGAACGTTCAATTTGCGTGCTTCGGGTGAATCGAAGGGCATACC 3099964 Query 53512 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 53571 |||| || || || ||||| | || | || || ||||||||||| | || | | | Sbjct 3099965 CAAGATCATGAATGCATCTGCAAGACCGTTGACTCCGATACCGATAGGACGGTGACGCAT 3100024 Query 53572 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTT 53631 ||||| | |||||| | || |||||||| ||||| |||||||| || | ||| Sbjct 3100025 GTTAGATCTGCGTGCTTCTTCGACTGGGTAATAATTGATATCAATAATTTTGTTCAAGTT 3100084 Query 53632 TCTGACA-ATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTATTA 53690 | ||| || |||||| | || | | | || |||||| | ||| | | || Sbjct 3100085 AC-CACAGATCACTTTGGCAACTGCGTGTAACTTCTTGAAATCATA-AGTC--TTTGTTG 3100140 Query 53691 CA-----AAC--ATGTT--CAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAG 53741 || ||| | ||| ||| ||||| || |||| ||| || ||||| || |||| || Sbjct 3100141 CAGGGTCAACGTAGGTTGGCAAAGCAATCGAAGCCAAATTGCACACGGCAACTTCATCAG 3100200 Query 53742 CATCCGCA-TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 53800 | | || |||| || || || ||||| | ||| ||||||||| || ||||| Sbjct 3100201 -GTGCACAGTATTCAATAATTTCTGTGCACAAGTTAGAGTTCTTGATGGTACCCAAATTC 3100259 Query 53801 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCA 53860 | ||| ||||| ||| |||| ||||| || || | |||||||| ||||||||||| Sbjct 3100260 TTTTGGTTACTTTTTCTGTTTGCTGCATCTTTGTACAACATGAATGGGTTACCAGTTTCA 3100319 Query 53861 ATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCT- 53919 | || ||||| | ||| || | ||| | | || || || | | ||||| Sbjct 3100320 GTTTGAGATTCAAGAATAGCATACCACAACTTTTGTGCTTTGATCTTCTTTACATATCTG 3100379 Query 53920 CTTTTCTCTTTCGTATAGTGT-ATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCA 53978 | || || ||||||| || | || | | |||||| || || || || || ||| Sbjct 3100380 CCTTGCT-TTTCGTA-AGACTCGTAAAGTTTTTCAAATTCTTCACCGTAACAATCAGCCA 3100437 Query 53979 ATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 54038 | ||||| |||| | || |||||||| |||| || || | | | || || |||| Sbjct 3100438 AACCAGGGGATTCGTTGGGGCACATCAAGCACCATTCACCATTTTGTTCAACACGCTTCA 3100497 Query 54039 TAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTT 54097 | || | || |||||||| ||||| ||| ||||| || | | | | ||| || ||| Sbjct 3100498 TGAACAAGTCTGGAATCCATAGAGC-ATAGAATAGTTCACGTGCACGAACTTCTTCTTTT 3100556 Query 54098 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 54157 || ||| || | ||| | ||| | | | ||| |||||||| ||||| | ||| Sbjct 3100557 CCGTGATTTTTGCGTAAATCCAAGAATTCAAACACATCTGAATGCCATGGTTCAACGTAA 3100616 Query 54158 ATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 54217 | || | | | || || | ||||| ||||| ||||| | || | ||| || | ||| Sbjct 3100617 ACGGCAAAAGCACCCGGTCTCTTGTTACCTCCTTGATCAACATAACGAGCAGTTGTGTTA 3100676 Query 54218 TAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTT 54277 | || | |||||| || | ||||| || || || || || || | || || | Sbjct 3100677 AATACACGCAACATAGGTACGATACCGTTACTTGTTCCGTTTGTACCTGCAATGTATGAT 3100736 Query 54278 CCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAAT 54337 || | | ||||| || ||| || || || || ||||| | || || || | | Sbjct 3100737 CCTGTTCCGCGAATGTTGTGAATGTTTAATCCGATACCACCTGCACTCTTGGAAATCATT 3100796 Query 54338 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 54397 || || ||| | |||||||| || || || || |||||| ||||| || | Sbjct 3100797 GCACAAATTTTGAGTGTATCATAAATACCATCAATGGAATCATCTTTCATGGAAACCAAG 3100856 Query 54398 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 54457 || || |||||||| | | ||| || ||||| || | ||| || || || || Sbjct 3100857 AAGCATGAGGACATTTGTGGTCTTGGAGTACCAGCATTGAAAAGGGTTGGTGATGCATGT 3100916 Query 54458 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGA 54517 ||||| | |||||| | || ||||| || || || || | || | ||| | Sbjct 3100917 GTAAAGTACTTTTCACTCAAAAGGTTGTATGTTTCAATTGCAGCATCAACATCTTCTCCG 3100976 Query 54518 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTT 54577 ||||| || || || |||||||| ||||| || || ||||||||| | | || || Sbjct 3100977 TGAATACCAACGGCAACACGCATCAACATATGTTGTGGTCTTTCAGCAACTTTTCCATTG 3101036 Query 54578 ATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 54636 || || | ||| ||| ||| | || || |||||||| |||| || || ||| || Sbjct 3101037 ATACGCAAAAGGTATGATCGTTCTAGGGTCTTGAAACCAAAGAAGTTATAGTGGAAA-TC 3101095 Query 54637 TCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTAC-ATCCATGG 54695 || || ||||| || | |||| | || | | || || | | | | | ||| Sbjct 3101096 ACGATCATAAATGATTGCAGAGTCTAATTGTGCTTGATTCTTCATGATTGCGTTGTATGT 3101155 Query 54696 TAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAAT 54755 | | | ||| || || || || || ||||| ||||| || || | | |||| Sbjct 3101156 TGTTTC-TGAGATCATTGGGCTGTGCTTTCCATTGCGTGGATTAACGTATTCGTACAAAT 3101214 Query 54756 CCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATT--TGATACGGCTAT 54813 | || || |||| ||| || || ||| |||||||| | ||| ||||| || || Sbjct 3101215 CTTTGATGACTTGACTGAACGTCTTACGTGTCTCTTTGTGCAAATTGCTGATA--GCAAT 3101272 Query 54814 TCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGG 54872 | || || | | |||||||| || || ||| || | || || || |||||| Sbjct 3101273 ACGTGCTGCCAAGACAGCATAATCGGGGTGGGTTGTTGT-CTTGTATGCAGCAGTTTCGG 3101331 Query 54873 CTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCA 54932 | | || |||| | ||| |||||||| || |||| || || || | || || || Sbjct 3101332 CAGCCAAGTTGTCAAGTTCAACCGTTGTCACACCATCGTAAATACCATCAATGACTTTTC 3101391 Query 54933 TAGCTATTTTAATAGGATC 54951 | | |||| |||||| || Sbjct 3101392 TGGTAATTTCAATAGGGTC 3101410 Score = 226 bits (250), Expect = 3e-54 Identities = 581/866 (67%), Gaps = 24/866 (3%) Strand=Plus/Minus Query 23835 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAAT 23894 || ||||| ||| |||||| | || ||| || || || ||||| || || ||| Sbjct 1008057 ACGCCCATCTTTGAGTATTCGGCAACCTTTTTCTCAAAGAAGTTAGTCTTTCCGGTTAAA 1007998 Query 23895 GATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAAT-CCCAA 23953 || || || ||||| ||||| |||| ||||| |||| || ||||| | ||||| Sbjct 1007997 GAGATGTTCTCCATCCAATCGAATGGGTTGGTTGCATTGTATGC-CTTTTCGTTACCCAA 1007939 Query 23954 TTCAGAAATCAAT---CTATCTGCGACA-AACTCCATATATGTTTTCATCATTTCACAAT 24009 || | |||| | ||| || ||| || || || ||| ||||| || | | Sbjct 1007938 ---AGCCACCAATAGACGATCAGC-ACAGAATTCAATGTATTGACACATCAATTTGGAGT 1007883 Query 24010 TCATTCCTAT-AAGTTTAACTGGAAGAGCCACAGT-AAGAAATTCTTGTTCAATAGAGAC 24067 ||||||| || ||||| | ||| | ||| |||| |||||| | |||||| || ||||| Sbjct 1007882 TCATTCCGATTAAGTTGCA-TGGTAAAGCATCAGTTAAGAAACT-TTGTTCGATTGAGAC 1007825 Query 24068 CGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCG-GTGGATACAATAAATGTTTAA 24126 || ||||| ||||| | ||||| || | | | | ||| ||||| | | Sbjct 1007824 AGCTTCTGTGATAATCTTGTTCACTGTATCAGGATGAGCGCGCTTACGC-AAATGGCTGA 1007766 Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| ||||||||||||||| ||||| ||| || ||||| || || ||||| ||||| | Sbjct 1007765 ACAACAAACATGCGAAATCAGTGTGTAAACCTTCATCTCTGCTGATCAATTCATTGGAGA 1007706 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 24246 | || | |||||||| | |||||||| || ||||| || || || ||||| ||| Sbjct 1007705 ATGTCAAACCGGGCATCAATCCACGCTTCTTGAGCCAGAAGATACTTGCGAATGAACCAC 1007646 Query 24247 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGC--- 24303 ||||| || ||||| || || ||||| || | | | ||| || | ||| | Sbjct 1007645 TGAAGAAGATACCTTCAACGGCAGCAAAAGCGACCAAACGTTCAGCAAATGTGGCCCGCT 1007586 Query 24304 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363 ||||| ||||||||| | |||||||| ||||| |||| || || ||||| || | Sbjct 1007585 TGTCAGAAATCCACTTTAGTGCCCAATCTGCCTTTGTTTTGACGACTGGAATTGTTTCAA 1007526 Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 24423 |||||| || | | | || || | || | |||||||||||||| | | Sbjct 1007525 TAGCATCGAACAAGAACTCGCGTTGATCAGGGTCACGGATGTATGTATCAATCAACAAAG 1007466 Query 24424 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 24483 || |||| || ||||||||||| || ||||| || || ||||| ||||| || | Sbjct 1007465 AGTAAGTTTCTGAGTGAATGTTTTCCATCATGATTTGGAAACCATAGAAGCATCTTGCTT 1007406 Query 24484 CGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 24543 | | || |||||| | |||||||| | || |||||||| || || || ||| Sbjct 1007405 CTGCTGCTTGAACTTCTCCGCTGAATCGTTCGACCAAGTTTTCATTGACGATACCATCAG 1007346 Query 24544 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT--AGT-- 24599 || ||||| || ||||| || || || |||| ||||| || ||| | | Sbjct 1007345 AAGCGGCAAAGAATGCCAAAACGTGAGAGATGAAATGACGTTCGT-TGTCGTTCAACTTG 1007287 Query 24600 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 24659 || | |||||| | | |||||| || | ||| | ||||| | ||||| || || || Sbjct 1007286 TTGTCCCAATCGTGCAAATCTTTGGACAAATCAATCTCTTCTGCGGTCCAGAAAGAAGCT 1007227 Query 24660 TCTGCCTTTTTATACATATTCCAGAT 24685 ||||| ||||| ||||| | ||| || Sbjct 1007226 TCTGCTTTTTTGTACATTTGCCAAAT 1007201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721169551840