Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq1 100 2e-16 seq3 84.2 2e-11 >seq1 Length=6968282 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || ||||||||||||| || || || || || ||| ||| | | Sbjct 6898257 ATGCAAATCTTTGTCAAAACATTGACAGGAAAGACGATCACATTGGAAGTTGAATCTTCC 6898316 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | || | || || ||| || ||||||||| | || ||| ||| Sbjct 6898317 GACACGATTGACAATGTCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCGCCAGACCAA 6898376 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | |||||||| || |||||| ||||||| | ||| |||| |||||||| Sbjct 6898377 CAACGTTTGATCTTTGCAGGTAAACAATTGGAAGACGGCCGTACTTTGGCTGATTACAAC 6898436 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 || || ||||||||||| | ||| ||||||| || Sbjct 6898437 ATCCAAAAGGAATCTACCTTGCACTTGGTGTTGCG 6898471 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 ||| |||||| | | |||||||| || || ||| |||||||| || |||| |||| || Sbjct 595439 AGACCAACAACGTTTGATCTTTGCTGGAAAGCAATTGGAAGATGGCAGAACTTTGGCTGA 595498 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 |||||| || || |||||||||||| | ||| |||| Sbjct 595499 TTACAACATCCAAAAGGAATCTACTTTGCACTTGGT 595534 >seq3 Length=3165745 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||||||| | || |||||||||| | ||||||||||| || || ||| ||||| Sbjct 2529325 GACAAAGAAGGTATTCCACCAGATCAACAACGTCTTATCTTTGCTGGTAAGCAATTGGAA 2529384 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| || |||||||||||||||| || |||||| || || || | || || Sbjct 2529385 GATGGTCGTACATTGGCCGATTACAATATCCAAAAGGAAAGCACACTCCATCTCGTTTTG 2529444 Query 29175 CGATTACGAGGAGG 29188 ||||||| || || Sbjct 2529445 AGATTACGTGGTGG 2529458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428335697219990