Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq1 113 4e-20 seq3 98.7 8e-16 >seq1 Length=6968282 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || ||||||||||||| || || || || || ||| ||| | | Sbjct 6898257 ATGCAAATCTTTGTCAAAACATTGACAGGAAAGACGATCACATTGGAAGTTGAATCTTCC 6898316 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | || |||| || ||| || ||||||||| | || ||| ||| Sbjct 6898317 GACACGATTGACAATGTCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCGCCAGACCAA 6898376 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | |||||||| || |||||||||||||| | ||| |||| |||||||| Sbjct 6898377 CAACGTTTGATCTTTGCAGGTAAACAATTGGAAGACGGCCGTACTTTGGCTGATTACAAC 6898436 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || |||||||||||||| | ||| ||||||| || Sbjct 6898437 ATCCAAAAGGAATCTACCTTGCACTTGGTGTTGCG 6898471 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || |||| || ||||| || || || |||||| || ||| || | Sbjct 6897573 ATGCAAATCTTTGTCAAGACCTTGACTGGTAAGACAATTACCCTTGAGGTTGAATCCTCT 6897632 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || |||| || || || ||||||||| | || ||| ||| Sbjct 6897633 GATACTATTGACAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 6897692 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||| | |||||||| || || ||||||||||| ||| |||| || ||||| Sbjct 6897693 CAAAGATTGATCTTTGCCGGTAAGCAATTGGAAGACGGTCGCACTTTGGCTGACTACAAC 6897752 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || |||||||| || || |||||| ||||||| || Sbjct 6897753 ATCCAAAAGGAGTCCACACTTCACTTGGTGTTGCG 6897787 Score = 93.3 bits (102), Expect = 3e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 25148 AGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGA 25207 ||| |||||| | | |||||||| || || |||||||||||| || |||| |||| || Sbjct 595439 AGACCAACAACGTTTGATCTTTGCTGGAAAGCAATTGGAAGATGGCAGAACTTTGGCTGA 595498 Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 |||||| || ||||||||||||||| | ||| |||| Sbjct 595499 TTACAACATCCAAAAGGAATCTACTTTGCACTTGGT 595534 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | ||||| | ||||| ||||| || ||| ||| ||| | Sbjct 5661208 ATGCAAATTTTTGTAAAAACCCTTACGGGTAAAACAATCACCCTCGAGGTTGAATCAAAC 5661149 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | ||| ||| ||| || || |||||| | || ||| ||| Sbjct 5661148 GATACTATTGACAATGTTAAGGCAAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAA 5661089 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | |||||||| || || |||||||||||| ||| |||| |||||||| Sbjct 5661088 CAACGTTTAATCTTTGCTGGTAAGCAATTGGAAGATGGGCGTACTTTGGCTGATTACAAC 5661029 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || ||||||||||| || | ||| |||| || || Sbjct 5661028 ATCCAAAAGGAATCCACCTTGCACTTGGTCTTGCG 5660994 >seq3 Length=3165745 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || |||| ||||||||||| ||||| |||||| || |||| | | Sbjct 2529460 ATGCAAATCTTTGTCAAGACATTGACGGGAAAAACTATTACCTTGGAGGTGGAATCATCT 2529519 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | |||| || ||| |||||||||||| | || ||| ||| Sbjct 2529520 GATACAATCGATAACGTCAAAGCCAAGATTCAGGATAAAGAAGGTATTCCACCAGACCAA 2529579 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | |||||||| || |||||||| ||||| || ||||||||||||| Sbjct 2529580 CAACGTTTGATCTTTGCTGGTAAACAATTAGAAGACGGACGTACATTGGCCGATTACAAC 2529639 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| ||| |||||||| | || || || || || || || Sbjct 2529640 ATTCAAAAAGAAAGCACTCTTCATCTCGTTTTGCGCTTGCGTGGCGG 2529686 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | ||||| ||||| || || || || || || ||| | | Sbjct 2529232 ATGCAAATCTTTGTAAAAACTTTGACCGGAAAGACGATCACTTTGGAGGTTGAATCTTCG 2529291 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | ||||| || ||| || ||||||||| | || ||||||| Sbjct 2529292 GATACCATTGACAACGTCAAGGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAA 2529351 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | ||||||||||| || || |||||||||||| || |||||||||||||| Sbjct 2529352 CAACGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGTACATTGGCCGATTACAAT 2529411 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||||||| || || || | || || ||||||| || || Sbjct 2529412 ATCCAAAAGGAAAGCACACTCCATCTCGTTTTGAGATTACGTGGTGG 2529458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410796509618012