Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2 152 5e-32 seq1 95.1 1e-14 >seq2 Length=3834998 Score = 152 bits (168), Expect = 5e-32 Identities = 388/582 (67%), Gaps = 15/582 (3%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| ||||||||||| || || || || |||||||||| || ||| | || || Sbjct 1007201 ATTTGGCAAATGTACAAAAAAGCAGAAGCTTCTTTCTGGACCGCAGAAGAGATTGATTTG 1007260 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGC---TTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||| || | ||| ||||| | |||||||||||||| || ||||||||| Sbjct 1007261 TCCAAAGATTTGCACGATTGGGACAACAAGTTGAACGACAACGAACGTCATTTCATCTCT 1007320 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| |||| || || ||||| || || |||||||| || || ||||||| || Sbjct 1007321 CACGTTTTGGCATTCTTTGCCGCTTCTGATGGTATCGTCAATGAAAACTTGGTCGAACGA 1007380 Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| || | || || || | || || || | |||||||| || || || ||| || Sbjct 1007381 TTCAGCGGA-GAAGTTCAAGCAGCAGAAGCAAGATGCTTCTATGGTTTCCAAATCATGAT 1007439 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA----CGTG-CGCTCT 116926 ||| ||| | ||||| |||| || || | || || || || |||| | || Sbjct 1007440 GGAAAACATTCACTCAGAAACTTACTCTTTGTTGATTGATACATACATCCGTGACCCTGA 1007499 Query 116927 TCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAG 116986 || | | | || || ||||| | || || || || || || ||||||| ||| Sbjct 1007500 TC-AACGCG-AGTTC---TTGTTCGATGCTATTGAAACAATTCCAGTCGTCAAAACAAAG 1007554 Query 116987 GCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTG 117046 || || ||||| || ||||| | | || |||| | || | || || |||| Sbjct 1007555 GCAGATTGGGCACTAAAGTGGATTTCTGACAAGCGGGCCACATTTGCTGAACGTTTGGTC 1007614 Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106 || || || ||||| || || ||||||| || ||||| || || |||||| Sbjct 1007615 GCTTTTGCTGCCGTTGAAGGTATCTTCTTCAGTGGTTCATTCGCAAGTATCTTCTGGCTC 1007674 Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAG 117166 ||||| || || | |||||||| |||| ||| ||| || | ||| ||| || || Sbjct 1007675 AAGAAGCGTGGATTGATGCCCGGTTTGACATTCTCCAATGAATTGATCAGCAGAGATGAA 1007734 Query 117167 GGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 ||| | || || || || |||||| |||||| |||||| Sbjct 1007735 GGTTTACACACTGATTTCGCATGTTTGTTGTTCAGCCATTTG 1007776 >seq1 Length=6968282 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || |||||||| || ||||| ||||| |||||| |||| || ||| | | | Sbjct 5661208 ATGCAAATTTTTGTAAAAACCCTTACGGGTAAAACAATCACCCTCGAGGTTGAATCAAAC 5661149 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| ||| |||| ||||| || || || || | ||||| Sbjct 5661148 GATACTATTGACAATGTTAAGGCAAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAA 5661089 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| || || || || |||| || | ||| || | || |||||| Sbjct 5661088 CAACGTTTAATCTTTGCTGGTAAGCAATTGGAAGATGGGCGTACTTTGGCTGATTACAAC 5661029 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| ||||| |||| |||| | || ||||| Sbjct 5661028 ATCCAAAAGGAATCCACCTTGCACTTGGTCTTGCG 5660994 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| | || || || || ||||| | || || ||| | || Sbjct 6898257 ATGCAAATCTTTGTCAAAACATTGACAGGAAAGACGATCACATTGGAAGTTGAATCTTCC 6898316 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || || | |||| | || |||| |||||||| || ||||| | ||||| Sbjct 6898317 GACACGATTGACAATG-TCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCGCCAGACCA 6898375 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | |||| || || ||||| |||| |||| || || | || ||||| Sbjct 6898376 ACAACGTTTGATCTTTGCAGGTAAACAATTGGAAGACGGCCGTACTTTGGCTGATTACAA 6898435 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||| ||||| | || |||| | |||||||| Sbjct 6898436 CATCCAAAAGGAATCTACCTTGCACTTGGTGTTGCG 6898471 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || || || || || ||| | || || ||| || | Sbjct 6897573 ATGCAAATCTTTGTCAAGACCTTGACTGGTAAGACAATTACCCTTGAGGTTGAATCCTCT 6897632 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | |||| | || || | |||||||| || ||||| | ||||| Sbjct 6897633 GATACTATTGACAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 6897692 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| || | |||| || || || || |||| |||| ||||| | ||||||||| Sbjct 6897693 CAAAGATTGATCTTTGCCGGTAAGCAATTGGAAGACGGTCGCACTTTGGCTGACTACAAC 6897752 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| |||||| |||| || || | |||||||| Sbjct 6897753 ATCCAAAAGGAGTCCACACTTCACTTGGTGTTGCG 6897787 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || || || || ||||| | || |||||| || Sbjct 6898029 ATGCAAATCTTTGTCAAGACACTTACTGGTAAGACAATCACACTAGAAGTCGAAAGCAGT 6898088 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | |||| | || || | |||||||| || || || | ||||| Sbjct 6898089 GATACAATTGATAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGACCAA 6898148 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||| | ||| || || || |||| |||| ||||| | ||||||||| Sbjct 6898149 CAACGTCTCATTTTCGCTGGTAAGCAATTGGAAGACGGACGCACATTGGCTGACTACAAC 6898208 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| || ||| |||| | ||| | || ||||| Sbjct 6898209 ATCCAAAAAGAGTCCACCTTACATTTGGTATTGCG 6898243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218826466080