Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq4 167 4e-36 seq1 145 1e-29 seq3 143 4e-29 >seq4 Length=1961900 Score = 167 bits (184), Expect = 4e-36 Identities = 339/498 (68%), Gaps = 29/498 (6%) Strand=Plus/Plus Query 205453 GCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCCATA 205512 || ||||||| || | |||| |||||| || | ||| ||||| || |||||||| | | Sbjct 1780230 GCGATCATATGTGTAAGTAAAGCATAACTTGCGATATTGAATGGGACTCCTAAACCTAAA 1780289 Query 205513 TCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTA--TTAA-------TTACA 205563 ||| || | ||||||||||||||||| ||| | ||| ||| | || || || Sbjct 1780290 TCACAAGAACGTTGATACATTTGACATGAAAGTTCTTTTTTACCTGAAGGCGAACTTTCA 1780349 Query 205564 TG------------AAATTGTACAAAACA-ATGACAAGGTGGTATAACCATATTTTCAAC 205610 | |||||| |||||||| |||||||||||||| |||| ||| | Sbjct 1780350 GGTAAAGAAACGAAAAATTG-ACAAAACATATGACAAGGTGGTAATGCCATCTTTGTTAA 1780408 Query 205611 ATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttatttt 205670 |||| |||||||| || | || ||||| ||| | | || |||||||| ||||| Sbjct 1780409 ATCTGCCGGATTCCATGCACTCAAAATTATTCTTCGATCTGTTGGATTATTTTTAATTTT 1780468 Query 205671 atttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATC-CATATCAA 205729 || || | | | |||||||||||| ||||| |||||||| ||| || | Sbjct 1780469 ATCAATCACTTCTCTTAATTGATCAACACCTTGTCCTGTATAATCATCATCGCACGT-TT 1780527 Query 205730 TATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTT 205789 | |||| || |||||||| | ||||||||| || || ||||| |||| ||||||| || Sbjct 1780528 TGTATTCTGCTCCAAAATGTCTCCATTGAAAGCCGTATACTGGTCCTAGATCACCTGCTC 1780587 Query 205790 TTCTATCATTAAAACCACGtttttttatatatt--ttaatgatccattttcatcccaaat 205847 ||||| || || ||| || | | ||| ||| | |||||| |||||||||| Sbjct 1780588 GTCTATGCCCAAGTCCTCGTGATTCCAAAAATTCCTTACT--TCCATTGCCATCCCAAAT 1780645 Query 205848 atggattcctttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAA 205907 ||| || |||| | ||| | | | || ||| ||| | | |||||||||||| Sbjct 1780646 ATGAATGTCTTTTTCCGTTAACAATTGCGAATCAGTCTTTCCGGCAACAAACCATAATAA 1780705 Query 205908 TTCTTCAACAATTCCTCT 205925 ||| || | || ||||| Sbjct 1780706 TTCCTCCAAAACACCTCT 1780723 >seq1 Length=6968282 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | |||||||| || || || || || || |||| | ||| | | Sbjct 6898029 ATGCAAATCTTTGTCAAGACACTTACTGGTAAGACAATCACACTAGAAGTCGAAAGCAGT 6898088 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| |||| | ||| || || ||||| ||||||||||| ||||| || ||| Sbjct 6898089 GATACAATTGATAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGACCAA 6898148 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || ||||| || || || ||||| || || | || ||||| | || || || Sbjct 6898149 CAACGTCTCATTTTCGCTGGTAAGCAATTGGAAGACGGACGCACATTGGCTGACTACAAC 6898208 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || |||||||| || || || |||||||| || ||| | || |||||||| Sbjct 6898209 ATCCAAAAAGAGTCCACCTTACATTTGGTATTGCGTCTCCGTGGTGGTAT 6898258 Score = 132 bits (146), Expect = 7e-26 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | |||||||||||||| || || || || |||| | ||| | Sbjct 6897801 ATGCAAATTTTTGTCAAGACACTAACAGGAAAGACAATCACACTAGAAGTCGAAAGCAGC 6897860 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | ||| || || ||||| ||||||||||| ||||| || ||| Sbjct 6897861 GACACTATTGAYAACGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 6897920 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || |||||||| |||||||| || || | || ||||| | ||||| || Sbjct 6897921 CAACGTTTGATCTTTGCAGGTAAACAATTGGAAGACGGACGCACATTGGCTGATTACAAC 6897980 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| |||||||| || | || ||||| || || | || |||||||| Sbjct 6897981 ATTCAGAAAGAATCTACACTCCACTTGGTCTTGCGCCTCCGTGGTGGTAT 6898030 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || ||| | ||||| || || || || | || ||||| | Sbjct 6898257 ATGCAAATCTTTGTCAAAACATTGACAGGAAAGACGATCACATTGGAAGTTGAATCTTCC 6898316 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| || |||||||| ||||||||||| || || || ||| Sbjct 6898317 GACACGATTGACAATGTCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCGCCAGACCAA 6898376 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || |||||||| |||||||| || || | || || || | ||||| || Sbjct 6898377 CAACGTTTGATCTTTGCAGGTAAACAATTGGAAGACGGCCGTACTTTGGCTGATTACAAC 6898436 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || ||||| ||||| || ||||| ||||| || ||| | || ||||| Sbjct 6898437 ATCCAAAAGGAATCTACCTTGCACTTGGTGTTGCGTCTTCGTGGTGG 6898483 Score = 118 bits (130), Expect = 2e-21 Identities = 169/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| | || || || || || || | ||| ||||| | | Sbjct 6897573 ATGCAAATCTTTGTCAAGACCTTGACTGGTAAGACAATTACCCTTGAGGTTGAATCCTCT 6897632 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| || || ||||| ||||||||||| ||||| || ||| Sbjct 6897633 GATACTATTGACAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 6897692 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || ||||| || || ||||| || || |||| || || | || || || Sbjct 6897693 CAAAGATTGATCTTTGCCGGTAAGCAATTGGAAGACGGTCGCACTTTGGCTGACTACAAC 6897752 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||| || || || | || ||||| || ||| | || |||||||| ||| || Sbjct 6897753 ATCCAAAAGGAGTCCACACTTCACTTGGTGTTGCGTCTCCGTGGTGGTATGCAAATTT 6897810 >seq3 Length=3165745 Score = 143 bits (158), Expect = 4e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | |||||| | || || |||||||| || | ||| | ||| || | Sbjct 2529460 ATGCAAATCTTTGTCAAGACATTGACGGGAAAAACTATTACCTTGGAGGTGGAATCATCT 2529519 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||||||| ||| | ||| || ||||| |||||||||||||| ||||| || ||| Sbjct 2529520 GATACAATCGATAACGTCAAAGCCAAGATTCAGGATAAAGAAGGTATTCCACCAGACCAA 2529579 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || ||||| || ||||||||||| || | || ||||| | ||||| || Sbjct 2529580 CAACGTTTGATCTTTGCTGGTAAACAATTAGAAGACGGACGTACATTGGCCGATTACAAC 2529639 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 |||||||||||| ||| | ||| | ||||| || || || || || Sbjct 2529640 ATTCAAAAAGAAAGCACTCTTCATCTCGTTTTGCGCTTGCGTGGCGG 2529686 Score = 136 bits (150), Expect = 6e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || |||||||| ||| |||| || | || || || || || ||| | ||| ||||| | Sbjct 2529229 ACTATGCAAATCTTTGTAAAAACTTTGACCGGAAAGACGATCACTTTGGAGGTTGAATCT 2529288 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 ||||| ||| || | || || |||||||| ||||||||||| ||||| ||| Sbjct 2529289 TCGGATACCATTGACAACGTCAAGGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGAT 2529348 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 |||||| | ||||| ||||| || || ||||| || ||| |||| ||||| | ||||| Sbjct 2529349 CAACAACGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGTACATTGGCCGATTAC 2529408 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| ||||| ||| || | ||| | ||||| | ||||| |||||||| Sbjct 2529409 AATATCCAAAAGGAAAGCACACTCCATCTCGTTTTGAGATTACGTGGTGGTAT 2529461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455452294400