Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1 109 5e-19 seq3 102 7e-17 >seq1 Length=6968282 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| |||||||| | || || || ||||| ||||||||||| || ||| ||| ||| Sbjct 5660996 CAAGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAATCAGCCAAAGTACGCCCATC 5661055 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || | || || ||||| |||| | ||| || || || || || || || |||||||| Sbjct 5661056 TTCCAATTGCTTACCAGCAAAGATTAAACGTTGTTGGTCTGGTGGAATACCTTCCTTGTC 5661115 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | ||| ||| ||||| | || | || || | || ||||||| ||| | || Sbjct 5661116 TTGAATCTTTGCCTTAACATTGTCAATAGTATCGTTTGATTCAACCTCGAGGGTGATTGT 5661175 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 ||| || || || |||||||||||||| ||||||| Sbjct 5661176 TTTACCCGTAAGGGTTTTTACAAAAATTTGCATGG 5661210 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | ||| |||||||||| |||||| ||||| |||||||||||||| Sbjct 6898029 TACCACCACGGAGGCGCAAGACCAAGTGGAGTGTAGATTCTTTCTGAATGTTGTAATCAG 6897970 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||||| || || | ||||| || || |||| | ||| || || || || | Sbjct 6897969 CCAATGTGCGTCCGTCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGTG 6897910 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || |||||| || || ||| || | || | ||||| |||| |||| Sbjct 6897909 GGATACCTTCTTTGTCTTGGATCTTGGCTTTGACGTTRTCAATAGTGTCGCTGCTTTCGA 6897850 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | || || || || || || || |||||||| ||||| Sbjct 6897849 CTTCTAGTGTGATTGTCTTTCCTGTTAGTGTCTTGACAAAAATTTGCAT 6897801 >seq3 Length=3165745 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || ||||||||||| || | |||| ||| || ||||| || ||||||||| Sbjct 2529460 TACCACCACGTAATCTCAAAACGAGATGGAGTGTGCTTTCCTTTTGGATATTGTAATCGG 2529401 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || ||| || | || || ||||| |||| ||||| || ||||| || | Sbjct 2529400 CCAATGTACGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGTTGATCTGGTG 2529341 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || |||||| ||| || || || | || | ||| |||| || | Sbjct 2529340 GAATACCTTCTTTGTCTTGAATCTTGGCCTTGACGTTGTCAATGGTATCCGAAGATTCAA 2529281 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | || | ||| || ||||||| |||||||||||| || ||||| Sbjct 2529280 CCTCCAAAGTGATCGTCTTTCCGGTCAAAGTTTTTACAAAGATTTGCAT 2529232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830093336136