Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1 123 3e-23 seq3 91.5 2e-13 >seq1 Length=6968282 Score = 123 bits (136), Expect = 3e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| ||||| ||||| ||| |||||||| || ||||||||||||| ||| ||| | Sbjct 5660993 ACGCAAGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAATCAGCCAAAGTACGCCC 5661052 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || | ||||||||||| || || | || || ||||| | || | | ||||| Sbjct 5661053 ATCTTCCAATTGCTTACCAGCAAAGATTAAACGTTGTTGGTCTGGTGGAATACCTTCCTT 5661112 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 || | ||| | |||| | | | | | | | || ||| | ||||| || |||| |||| Sbjct 5661113 GT-CTTGAATCTTTGCCTTAACATTGTCAATAGTATCGTTTGATTCAACCTCGAGGGTGA 5661171 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | ||||| ||||| || || |||||||| |||||||| Sbjct 5661172 TTGTTTTACCCGTAAGGGTTTTTACAAAAATTTGCAT 5661208 Score = 105 bits (116), Expect = 8e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| |||||||| || ||| ||| ||||| || ||||| ||||||| || || | Sbjct 6898244 ACGCAATACCAAATGTAAGGTGGACTCTTTTTGGATGTTGTAGTCAGCCAATGTGCGTCC 6898185 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || | |||||||||||||| ||||| || || ||||| | || | | || || Sbjct 6898184 GTCTTCCAATTGCTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTT 6898125 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| || ||||| | | | || || || ||| || || | ||||| Sbjct 6898124 GTCTTGGATCTTGGCTTTGACATTATCAATTGTATCACTGCTTTCGACTTCTAGTGTGAT 6898065 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || || ||||| |||||||||||||| Sbjct 6898064 TGTCTTACCAGTAAGTGTCTTGACAAAGATTTGCAT 6898029 Score = 102 bits (112), Expect = 9e-17 Identities = 165/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 42950 CTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 43009 ||| | ||| || | | |||||||||||| ||||| || |||||||| || ||||| Sbjct 6898490 CTAGTTTCCACCACGAAGACGCAACACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTA 6898431 Query 43010 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 |||||||| ||| || |||| || | || ||||| || || || | || || ||||| Sbjct 6898430 ATCAGCCAAAGTACGGCCGTCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTC 6898371 Query 43070 GGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCG 43128 | ||| | | || ||||| ||| | || | ||||| | | | ||||||| | Sbjct 6898370 TGGCGGGATACCTTCTTTGTCT-TGAATCTTGGCTTTGACATTGTCAATCGTGTCGGAAG 6898312 Query 43129 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || || | ||||| || || || || | || || |||||||||||||| Sbjct 6898311 ATTCAACTTCCAATGTGATCGTCTTTCCTGTCAATGTTTTGACAAAGATTTGCAT 6898257 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||||||||| || | |||| ||||||||| || ||||| ||||||| ||| || | Sbjct 6897788 ACGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTGCGACC 6897729 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || | |||||||| || || || | || || ||||| | || | | || || Sbjct 6897728 GTCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCTGGTGGGATACCTTCTTT 6897669 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| || ||||| | | | || || ||||| || || | || || Sbjct 6897668 GTCTTGGATCTTGGCTTTGACATTGTCAATAGTATCAGAGGATTCAACCTCAAGGGTAAT 6897609 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || | ||||| |||||||||||||| Sbjct 6897608 TGTCTTACCAGTCAAGGTCTTGACAAAGATTTGCAT 6897573 Score = 82.4 bits (90), Expect = 9e-11 Identities = 149/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 ||||| ||||| || | ||| || || ||||| ||||||||||||| || || || Sbjct 6898015 CGCAAGACCAAGTGGAGTGTAGATTCTTTCTGAATGTTGTAATCAGCCAATGTGCGTCCG 6897956 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || | || ||||| || || || | || || ||||| | || | | || ||| Sbjct 6897955 TCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTG 6897896 Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 || ||| || ||||| ||| | | |||||||| ||| || || | ||||| Sbjct 6897895 TCTTGGATCTTGGCTTTGA-CGTTRTCAATAGTGTCGCTGCTTTCGACTTCTAGTGTGAT 6897837 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || ||||| ||||| ||||| |||||||| Sbjct 6897836 TGTCTTTCCTGTTAGTGTCTTGACAAAAATTTGCAT 6897801 >seq3 Length=3165745 Score = 91.5 bits (100), Expect = 2e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025 || ||||| || | ||| | ||||| || |||||||| |||||||| |||| || || Sbjct 2529677 AAGCGCAAAACGAGATGAAGAGTGCTTTCTTTTTGAATGTTGTAATCGGCCAATGTACGT 2529618 Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085 |||| |||| || |||||||| || || | || || ||||| | || | | || Sbjct 2529617 CCGTCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGTGGAATACCTTCT 2529558 Query 43086 TTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGT 43144 || ||| ||| | || | ||||| | | | || || |||||||| || | || Sbjct 2529557 TTATCC-TGAATCTTGGCTTTGACGTTATCGATTGTATCAGATGATTCCACCTCCAAGGT 2529499 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| ||||| | ||||| |||||||||||||| Sbjct 2529498 AATAGTTTTTCCCGTCAATGTCTTGACAAAGATTTGCAT 2529460 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || | ||| | ||| || | ||| | |||||| |||||||| ||||||||||| ||| Sbjct 2529458 CCACCACGTAATCTCAAAACGAGATGGAGTGTGCTTTCCTTTTGGATATTGTAATCGGCC 2529399 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || | || || | ||||||||||| || || || || || || || | || Sbjct 2529398 AATGTACGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGTTGATCTGGTGGA 2529339 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 43134 | | || |||| | ||| | || | |||| ||| | | | || || ||||| | Sbjct 2529338 ATACCTTCTTTGT-CTTGAATCTTGGCCTTGA-CGTTGTCAATGGTATCCGAAGATTCAA 2529281 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | ||||| || || || || | || ||||||||||||||||| Sbjct 2529280 CCTCCAAAGTGATCGTCTTTCCGGTCAAAGTTTTTACAAAGATTTGCAT 2529232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817185432240