Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2 174 1e-38 >seq2 Length=3834998 Score = 174 bits (192), Expect = 1e-38 Identities = 564/861 (66%), Gaps = 30/861 (3%) Strand=Plus/Minus Query 15945 TTTGA-TATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 ||||| ||||| ||| | || |||||||| || || ||||| ||| || || || Sbjct 1008048 TTTGAGTATTCGGCAACCTTTTTCTCAAAGAAGTTAGTCTTTCCGGTTAAAGAGATGTTC 1007989 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTAT---TTATCGCATCCCAATTCCAAC 16060 ||||| |||| || || || ||| | | |||| || ||| ||||| ||| | Sbjct 1007988 TCCATCCAATCGAATGGGTTGGTTGCA---TTGTATGCCTTTTCGTTACCCAAAGCCACC 1007932 Query 16061 AATAATCTATCCGCCACA-AATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119 |||| | ||| || ||| ||||| || || || ||| || | |||||||||| || Sbjct 1007931 AATAGACGATCAGC-ACAGAATTCAATGTATTGACACATCAATTTGGAGTTCATTCCGAT 1007873 Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179 ||| || || | || || ||||| ||| ||| ||| || || ||||| |||| Sbjct 1007872 TAAGTTGCATGGTAAAGCATCAGTTAAGAAACTTTGTTCGATTGAGACAGCTTCTGTGAT 1007813 Query 16180 TATATCTCTTACTACACTATTTAACG----GAGGGTTTAAT-AAGTGTTTAAACATTATA 16234 || | | || |||| | | | | | | | ||| || || | |||| | | Sbjct 1007812 AATCT-TGTT----CACTGTATCAGGATGAGCGCGCTTACGCAAATGGCTGAACAACAAA 1007758 Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 || || |||||| || || ||||| || || || || || || || || ||||| | | Sbjct 1007757 CATGCGAAATCAGTGTGTAAACCTTCATCTCTGCTGATCAATTCATTGGAGAATGTCAAA 1007698 Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 || ||||| | ||| || || || | ||| || ||| || ||||||||| ||||| Sbjct 1007697 CCGGGCATCAATCCACGCTTCTTGAGCCAGAAGATACTTGCGAATGAACCACTGAAGAAG 1007638 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT---TCTAtttttactt 16411 ||||||||||| || ||||| || ||||| || ||| | | || | || | | Sbjct 1007637 ATACCTTCAACGGCAGCAAAAGCGACCAAACGTTCAGCAAATGTGGCCCGCTTGTCA--- 1007581 Query 16412 tctatccattttttagcccaatttgctttttgtttAAC-ACAGTTCATGTTCTCTATTGC 16470 ||||| ||| ||||||| ||| ||| ||| || || | |||| || || || Sbjct 1007580 GAAATCCACTTTAGTGCCCAATCTGCCTTTGTTTTGACGACTGGAATTGTT-TCAATAGC 1007522 Query 16471 ATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATA 16530 || || || | | || | || || || ||||| || | ||| || Sbjct 1007521 ATCGAACAAGAACTCGCGTTGATCAGGGTCACGGATGTATGTATCAATCAACAAAGAGTA 1007462 Query 16531 CATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGA 16590 ||||||| ||||| || ||||| || || |||||||| |||||||| ||||| | Sbjct 1007461 AGTTTCTGAGTGAATGTTTTCCATCATGATTTGGAAACCATAGAAGCATCTTGCTTCTGC 1007402 Query 16591 TATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGC 16650 | ||| ||||| | || | ||| | |||||||| || || || ||||| ||| Sbjct 1007401 TGCTTGAACTTCTCCGCTGAATCGTTCGACCAAGTTTTCATTGACGATACCATCAGAAGC 1007342 Query 16651 TGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC-TGAAAGT--TTTAA 16707 ||||| || || | | ||| || |||| |||||| || | || | || Sbjct 1007341 GGCAAAGAATGCCAAAACGTGAGAGATGAAATGACGTTCGTTGTCGTTCAACTTGTTGTC 1007282 Query 16708 CCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGC 16767 ||| || |||||||| || ||||| | ||||||| | ||||| |||||||| | || Sbjct 1007281 CCAATCGTGCAAATCTTTGGACAAATCAATCTCTTCTGCGGTCCAGAAAGAAGCTTCTGC 1007222 Query 16768 CTTTTTATACATTTTCCATAT 16788 ||||| ||||||| ||| || Sbjct 1007221 TTTTTTGTACATTTGCCAAAT 1007201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511664678800