Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq4 174 1e-38 >seq4 Length=1961900 Score = 174 bits (192), Expect = 1e-38 Identities = 491/746 (66%), Gaps = 51/746 (7%) Strand=Plus/Minus Query 20034 GAGAAATGAATTTCCCT-TATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAG 20092 |||| |||| ||| ||| || | || || || |||||||| | ||| ||| | || | Sbjct 1780767 GAGATATGACTTTACCTCTACTTACAACCAAGAGGGTATTTACCAGAGGTGTTTTGGAGG 1780708 Query 20093 AGTTATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTA----GAAAAAGGA 20148 | |||||||||||| || ||| || |||| | | |||| ||||||| Sbjct 1780707 AATTATTATGGTTTGTTGCCGGAAAGACTGATTCG--CAA--TTGTTAACGGAAAAAGAC 1780652 Query 20149 GTTAAGATTTGG-AGCGCACATGGATCTAAGCAATTTTTACACAGCAAT-GGATTTGACA 20206 || | |||||| | ||| ||||| |||| ||||||| | | || ||| ||| Sbjct 1780651 ATTCATATTTGGGATGGCA-ATGGAAGTAAGGAATTTTTGGA-ATCACGAGGACTTGGGC 1780594 Query 20207 ACCGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTG 20266 | | | || || ||| | || || || || || ||||||||||||||||||||||| | Sbjct 1780593 ATAGACGAGCAGGTGATCTAGGACCAGTATACGGCTTTCAATGGAGACATTTTGGAGCAG 1780534 Query 20267 AATATGT----TGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAAT 20322 |||| || |||| | |||| |||||||| || ||||||||| | | Sbjct 1780533 AATACAAAACGTGCGATGATGA----TTATACAGGACAAGGTGTTGATCAATTAAGAGAA 1780478 Query 20323 GTTATTAATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAAC 20382 || ||| || |||||||| || |||| || ||||||| ||||| | || ||||| Sbjct 1780477 GTGATTGATAAAATTAAAAATAATCCAACAGATCGAAGAATAATTTTGAGTGCATGGAAT 1780418 Query 20383 GCTAAAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTT 20442 | |||| | | ||||| || || || ||||||||| | || ||||||| |||| Sbjct 1780417 CCGGCAGATTTAACAAAGATGGCATTACCACCTTGTCATATGTTTTGTCAATTTTTCGTT 1780358 Query 20443 GCT------------------------AATAATGAATTGTCGTGTCAAATGTATCAACGA 20478 || || || ||| | || ||||||||||||||||| Sbjct 1780357 TCTTTACCTGAAAGTTCGCCTTCAGGTAAAAAAGAACTTTCATGTCAAATGTATCAACGT 1780298 Query 20479 TCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTAT 20538 || |||| | || | || || || |||||||| ||||||||||| | ||||| || Sbjct 1780297 TCTTGTGATTTAGGTTTAGGAGTCCCATTCAATATCGCAAGTTATGCTTTACTTACACAT 1780238 Query 20539 ATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCG 20598 ||||| || | || |||| | || | |||| || || | || ||||| || Sbjct 1780237 ATGATCGCCAAAGTGACAGGATGTGAAGCACGTGAATTGGTTTTAGCAATGGGAGATGCA 1780178 Query 20599 CATATTTACCTTAATCATATAGAACCTTTAAAATTACAGTTAACACGACAACCAAAACAA 20658 ||| |||| ||||| | |||||| | ||| ||| || | ||| |||||| || Sbjct 1780177 CATGTTTATAGAGATCATGTTGAACCTCTCAAAGAACAATTGAAACGTGAACCAAGACCG 1780118 Query 20659 TT-CCCAACT--CTTCGCATTACTCGAACTGTTAAAGATATTAACGATTTTAAAGCTGAT 20715 || ||||| | || | | || ||| ||| |||||||| | ||||| ||| ||| Sbjct 1780117 TTCCCCAAATTGATTTGGA-AACGTGAA--GTTGAAGATATTGATGATTTCAAATATGAA 1780061 Query 20716 GATTTTGTGTTAGAAGGTTATAATCC 20741 ||||||| || |||| ||||| || Sbjct 1780060 GATTTTGAAGTACAAGGCTATAAACC 1780035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399183717826810