Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 3e-14 >seq1 Length=6968282 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||||||||| || || ||||| ||||||||||| |||| || || |||||| Sbjct 6897781 ACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTGCGACCGTCTTCC 6897722 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || || ||| |||| | ||||||||| || || | ||||| || || Sbjct 6897721 AATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGG 6897662 Query 18237 ATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 || | | || ||||| | ||| ||| ||| || || |||| ||| || | || Sbjct 6897661 ATCT-TGGCTTTGACATTGTCAATAGTATCAGAGGATTCAACCTCAAGGGTAATTGTCTT 6897603 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||| || || ||||| |||||||| Sbjct 6897602 ACCAGTCAAGGTCTTGACAAAGATTTGCAT 6897573 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| ||||| |||||||| ||||||||||| || |||| ||| | |||||| Sbjct 6898009 ACCAAGTGGAGTGTAGATTCTTTCTGAATGTTGTAATCAGCCAATGTGCGTCCGTCTTCC 6897950 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 |||||||| || ||| |||| | | |||||| || || | ||||| || || Sbjct 6897949 AATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGG 6897890 Query 18237 ATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 || | | || ||||| | ||| |||||| | | ||| ||| | ||||| | || Sbjct 6897889 ATCT-TGGCTTTGACGTTRTCAATAGTGTCGCTGCTTTCGACTTCTAGTGTGATTGTCTT 6897831 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || | ||| || |||||||||||||| Sbjct 6897830 TCCTGTTAGTGTCTTGACAAAAATTTGCAT 6897801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343731851210