Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2 293 2e-74 seq3 98.7 9e-16 seq1 95.1 1e-14 >seq2 Length=3834998 Score = 293 bits (324), Expect = 2e-74 Identities = 992/1524 (65%), Gaps = 34/1524 (2%) Strand=Plus/Plus Query 22452 GGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACG 22511 |||| || ||||| || || || | || || || | | ||| ||||| || ||||| | Sbjct 3099595 GGTTAACAACTTGGAATTCTCCTGCTAACACACGCCTTGTGTAGATGTTTGAGGTGAAAG 3099654 Query 22512 GTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCA 22571 |||| || |||||||| ||| | || ||| ||| ||||| || ||||| || |||| Sbjct 3099655 GTTCAAAGCATTCATTGAATCCTAAAATTTGACTGGTAGAAGCAGTAGGCATGGGTGCCA 3099714 Query 22572 ACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAAT-TTTACTCTTGAGCATCGACCAGTCC 22630 ||| |||||| || | || ||||||| || ||| ||| || || || ||||||| | Sbjct 3099715 ACAATAGCGAATTACGTAAACCGTGCTCTGCAATCTTTTCTTTT-AGTTCAGACCAGTTC 3099773 Query 22631 CACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCC 22690 || |||||||| || || || || |||||| || ||||| || | || ||| || Sbjct 3099774 CATAGATCGGATGGTGTTACGTT---CCACATGTCATATTGTAATTCTCCCTTACTTGCA 3099830 Query 22691 GGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCC 22750 ||| || ||||| ||||| || | || || || | |||||| || |||| Sbjct 3099831 GGGGATCCCTCGTATGTTTCATATGTTCCTAATTCTTTAGCCAATTCGCAACTTCTCTCC 3099890 Query 22751 AACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTT 22810 || || | | || || || || ||||||| |||||||| | || || Sbjct 3099891 AAAGCAGCATGGTAGATCGTTTCAAAGATTTGAACGTTCAATTTGCGTGCTTCGGGTGAA 3099950 Query 22811 TCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATC 22870 ||| | ||||||| || |||| ||| || || || | ||| | || || |||||||| Sbjct 3099951 TCGAAGGGCATACCCAAGATCATGAATGCATCTGCAAGACCGTTGACTCCGATACCGATA 3100010 Query 22871 GGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATT 22930 || |||| || || || ||| || | || || |||| ||| || Sbjct 3100011 GGACGGTGACGCATGTTAGATCTGCGTGCTTCTTCGACTGGGTAATAATTGATATCAATA 3100070 Query 22931 GTTCTGTTCAAGTTTCT---GGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCG 22987 || |||||||||| | | |||| ||| | | | || || Sbjct 3100071 ATTTTGTTCAAGTTACCACAGATCAC---TTTGGCAACTGCGTGTAACTTCTTGAAATCA 3100127 Query 22988 TAAACGCCCGATTGTACAACAAACTT--GTTGACG--GCGATCGAGGCAAGATTGCATAC 23043 ||| | ||| | ||| | |||| | || ||||| || | |||||| || Sbjct 3100128 TAAGTCTTTG-TTGCAGGGTCAACGTAGGTTGGCAAAGCAATCGAAGCCAAATTGCACAC 3100186 Query 23044 GGCCACCTCGTCTT-TGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTA 23102 ||| || || || || || ||| || | |||||| || || | || ||| | Sbjct 3100187 GGCAACTTCATCAGGTGCACA-GTATTCAATAATTTCTGTGCACAAGTTAGAGTTCTTGA 3100245 Query 23103 TCGTGCCCAAATTGCTCTGGTTGCTTTTTC-GATTGCACGAATCCTTGTAGAGCATGTAC 23161 | || |||||||| | ||||| ||||||| | |||| | ||| ||||| | |||| | Sbjct 3100246 TGGTACCCAAATTCTTTTGGTTACTTTTTCTGTTTGCT-GCATCTTTGTACAACATGAAT 3100304 Query 23162 GGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACA 23221 || | || || || || || || | || || ||||| | || || | | Sbjct 3100305 GGGTTACCAGTTTCAGTTTGAGATTCAAGAATAGCATACCACAACTTTTGTGCTTTGAT- 3100363 Query 23222 CGTCGC-ACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACC 23280 | || || || ||||||| | ||||| | ||| | |||||||| |||| Sbjct 3100364 CTTCTTTACATATCTGCCTTGCTTTTCGTAAGACTCGTAAAGTTTTTCAAATTCTTCACC 3100423 Query 23281 GTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATT 23340 |||||| || |||| || || |||| | || ||||| | | ||| || | |||| Sbjct 3100424 GTAACAATCAGCCAAACCAGGGGATTCGTTGGGGCACATCAAGCACCA--TTCAC-CATT 3100480 Query 23341 TT---CAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGC 23397 || |||| || |||| || | || || ||||||||||| ||||| ||||| || || Sbjct 3100481 TTGTTCAACACGCTTCATGAACAAGTCTGGAATCCATAGAGCATAGAATAGTTCACGTGC 3100540 Query 23398 GCGCACCTCCTCTTTGCCGGTGTTCTTTTTC--AAATCCAAAAAGTCCAACACGTCCGCA 23455 || || || ||||| || ||| | |||| | |||||||| || || ||||| || | | Sbjct 3100541 ACGAACTTCTTCTTTTCC-GTGAT-TTTTGCGTAAATCCAAGAATTCAAACACATCTGAA 3100598 Query 23456 TGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACG 23515 ||||| || || | |||||||||||| || ||||||||||| || || || ||||| || Sbjct 3100599 TGCCATGGTTCAACGTAAACGGCAAAAGCACCCGGTCTCTTGTTACCTCCTTGATCAACA 3100658 Query 23516 TAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCT 23575 ||||| || || |||| | || | | ||| || |||| |||||| | ||| | Sbjct 3100659 TAACGAGCAGTTGTGTTAAATACACGCAACATAGGTACGATACCGTTACTTGTTCCGTTT 3100718 Query 23576 ACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCG 23635 || || | || ||| || | |||| |||||||| || || || || || || Sbjct 3100719 GTACCTGCAATGTATGATCCTGTTCCGCGAATGTTGTGAATGTTTAATCCGATACCACCT 3100778 Query 23636 CCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCC 23695 | || || ||||| || || ||| || || || || || || || ||| || Sbjct 3100779 GCACTCTTGGAAATCATTGCACAAATTTTGAGTGTATCATAAATACCATCAATGGAATCA 3100838 Query 23696 TCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAAC 23755 ||||| | | |||||||| || || |||||||| | | | || ||| | || ||| Sbjct 3100839 TCTTTCATGGAAACCAAGAAGCATGAGGACATTTGTGGTCTTGGAGTACCAGCATTGAAA 3100898 Query 23756 AGTGTCGGGCTGGCGTGCGTAAAGTATCCATTC-GACATTAGATTGTACGTGTCGATGGC 23814 || || || || || |||||||| | ||| || || ||||| || || || || Sbjct 3100899 AGGGTTGGTGATGCATGTGTAAAGTA-CTTTTCACTCAAAAGGTTGTATGTTTCAATTGC 3100957 Query 23815 GGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCT 23874 ||||||| || |||||||| ||||| | ||| || ||||||| ||| | ||| ||||| Sbjct 3100958 AGCATCAACATCTTCTCCGTGAATACCAACGGCAACACGCATCAACATATGTTGTGGTCT 3101017 Query 23875 CTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAA 23934 || | || || || || || ||||| |||| | || || || ||||| Sbjct 3101018 TTCAGCAACTTTTCCATTGATACGCAAAAGGTATGATCGTTCTAGGGTCTTGAAACCAAA 3101077 Query 23935 ATAGTCATAGTTAAAGTCACGATC 23958 ||| ||||| || |||||||| Sbjct 3101078 GAAGTTATAGTGGAAATCACGATC 3101101 >seq3 Length=3165745 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| |||| || ||||| || ||| | || || ||| | || Sbjct 2529460 ATGCAAATCTTTGTCAAGACATTGACGGGAAAAACTATTACCTTGGAGGTGGAATCATCT 2529519 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | |||||| | || ||| || ||||| | || || ||||| Sbjct 2529520 GATACAATCGATAACGTCAAAGCCAAGATTCAGGATAAAGAAGGTATTCCACCAGACCAA 2529579 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| | || || ||||| ||||| || |||||| || || |||||| ||| Sbjct 2529580 CAACGTTTGATCTTTGCTGGTAAACAATTAGAAGACGGACGTACATTGGCCGATTACAAC 2529639 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||||||||||| ||||||||||| || Sbjct 2529640 ATTCAAAAAGAAAGCACTCTTCATCTCGT 2529668 >seq1 Length=6968282 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||||||||| ||||| || || || || ||||| |||||| |||| |||||| | Sbjct 5661209 CATGCAAATTTTTGTAAAAACCCTTACGGGTAAAACAATCACCCTCGAGGTTGAATCAAA 5661150 Query 31252 CGACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 ||| | | | || || | | | || || || ||||||||||| | || || |||| Sbjct 5661149 CGATACTATTGACAATGTTAAGGCAAAG-ATTCAAGACAAGGAAGGTATTCCACCAGACC 5661091 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 | || ||| |||| || ||||| || || |||||||| ||| || ||||| | Sbjct 5661090 AACAACGTTTAATCTTTGCTGGTAAGCAATTGGAAGATGGGCGTACTTTGGCTGATTACA 5661031 Query 31371 ACATTCAAAAAGAATCGAC 31389 |||| ||||| ||||| || Sbjct 5661030 ACATCCAAAAGGAATCCAC 5661012 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| || ||||| || || ||||| | || || ||| | Sbjct 6897801 ATGCAAATTTTTGTCAAGACACTAACAGGAAAGACAATCACACTAGAAGTCGAAAGCAGC 6897860 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | |||||| | || ||||| ||||| | || || ||||| Sbjct 6897861 GACACTATTGAYAACGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 6897920 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| | || || || || ||||| ||||||||| || || ||||| ||| Sbjct 6897921 CAACGTTTGATCTTTGCAGGTAAACAATTGGAAGACGGACGCACATTGGCTGATTACAAC 6897980 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| |||||||| || || || |||| Sbjct 6897981 ATTCAGAAAGAATCTACACTCCACTTGGT 6898009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766076819360