Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2 367 2e-96 >seq2 Length=3834998 Score = 367 bits (406), Expect = 2e-96 Identities = 1412/2182 (65%), Gaps = 67/2182 (3%) Strand=Plus/Plus Query 62046 GTGAATTGAATGGGAGCGGATGCGG---GTTTCGTACGTAGATAGTACATTCCCGTTTTT 62102 ||||||||||| |||| ||||| || | ||||||| || || ||||||| ||| Sbjct 3099258 GTGAATTGAAT---AGCGTTTGCGGCAGGTCTTGTACGTAAGTAATAAGTTCCCGTCTTT 3099314 Query 62103 AGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGC- 62161 | || |||||||||| || |||||||| || | || || || | | | ||| Sbjct 3099315 AATCCTTTCTTCCATCCGTAGAAGTGCATACTTGTCAATT--GACCAAAT-GTAGGTGCG 3099371 Query 62162 --TATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 62219 || |||||| |||| | ||||||||| ||||| ||||| | || || ||||| Sbjct 3099372 CTTAAATGGATGTTCAAACTTTGACTTTGGCAAATGAATGCTCCACGATCGGCTGCCATA 3099431 Query 62220 TTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCT 62279 | ||||| | ||||| |||||||||| || || || | || || ||||| ||| Sbjct 3099432 TCAATGATTGCTTTTTGACTGATTTCCCAAACGGTCTTGTACAATCTTTTGATATCATCT 3099491 Query 62280 GGAAGGTTTGTA---TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCA 62336 |||| || | || ||||| |||||||||| | || || || ||||| || Sbjct 3099492 GGAATTCCTGGAACGTTTTGAATTGATCCACCATGAGCAATGATTCTGTTCTTCATTGTT 3099551 Query 62337 TCATTCCATAATTTTCTCTCGGTTAAAACTC-TAAGGAG-ATGCGGGTTAACTACTTGGA 62394 || ||||| | | || || | ||| | ||| ||||||| ||||||| Sbjct 3099552 TCTGACCATAGTCCTTGTTCCACCAATGTACGTAATAACCATG--GGTTAACAACTTGGA 3099609 Query 62395 ATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCAT 62454 ||||||| | || || | || ||||| || || ||| | ||||| | | |||| Sbjct 3099610 ATTCTCCTGCTAACACACGCCTTGTGTAGATGTTTGAGGTGAAAGGTTCAAAGCATTCAT 3099669 Query 62455 TATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTC 62514 | ||| ||||||||| || || ||||| ||||| ||||||| ||||| ||| | Sbjct 3099670 TGAATCCTAAAATTTGACTGGTAGAAGCAGTAGGCATGGGTGCCAACAATAGCGAATTAC 3099729 Query 62515 TAAGACCGTATGTTCTG--ATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGG 62572 | ||||| | |||| || || |||||||| | ||| ||||| ||||| || || Sbjct 3099730 GTAAACCGT--GCTCTGCAATCTTTTCTTTTAGTTCAGACCAGTTCCATAGATCGGATGG 3099787 Query 62573 TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGT 62632 | || |||||||| || ||||| || ||||| | ||||| Sbjct 3099788 TGTTACGTTCCACATGTCATATTGTAATTCTCCCTTACTTGCAGGGGATCCCTCGTATGT 3099847 Query 62633 ATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAAT 62692 ||||||| |||| | | ||| | || ||||| ||| || ||| | | || || Sbjct 3099848 TTCATATGTTCCTAATTCTTTAGCCAATTCGCAACTTCTCTCCAAAGCAGCATGGTAGAT 3099907 Query 62693 GGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAA 62752 ||||||||||| | || | | ||||||| || ||| || || | || Sbjct 3099908 CGTTTCAAAGATTTGAACGTTCAATTTGCGTGCTTCGGGTGAATCGAAGGGCATACCCAA 3099967 Query 62753 GAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 62812 || || || || || || | || | || || ||||||||||| | || | | | || Sbjct 3099968 GATCATGAATGCATCTGCAAGACCGTTGACTCCGATACCGATAGGACGGTGACGCATGTT 3100027 Query 62813 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT 62872 ||| | |||||| | || |||||||| ||||| |||||||| || | || | Sbjct 3100028 AGATCTGCGTGCTTCTTCGACTGGGTAATAATTGATATCAATAATTTTGTTCAAGTTACC 3100087 Query 62873 GACA-ATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATTACA- 62930 ||| || |||||| | || | | | || |||||| | | | | || || Sbjct 3100088 -ACAGATCACTTTGGCAACTGCGTGTAACTTCTTGAAATCATAAGTC---TTTGTTGCAG 3100143 Query 62931 ----AACAT--GTT--CAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCAT 62982 ||| | ||| ||| |||| || |||| ||| |||||||| || |||| || | Sbjct 3100144 GGTCAACGTAGGTTGGCAAAGCAATCGAAGCCAAATTGCACACGGCAACTTCATCAGG-T 3100202 Query 62983 CCGCA-TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGT 63041 | || |||| || || || ||||| | ||| |||||| || || ||||| | | Sbjct 3100203 GCACAGTATTCAATAATTTCTGTGCACAAGTTAGAGTTCTTGATGGTACCCAAATTCTTT 3100262 Query 63042 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 63101 || ||||| ||| |||| ||||| || || | |||||||| ||||||||||| | Sbjct 3100263 TGGTTACTTTTTCTGTTTGCTGCATCTTTGTACAACATGAATGGGTTACCAGTTTCAGTT 3100322 Query 63102 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCT-CCT 63160 |||||||| | ||| || | ||| | | | || || || | | ||||| ||| Sbjct 3100323 TGAGATTCAAGAATAGCATACCACAACTTTTGTGCTTTGATCTTCTTTACATATCTGCCT 3100382 Query 63161 TTCTCTTTCGTATAGAGT-ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC 63219 | || ||||||| ||| | || | | ||| || || || || || || |||| | Sbjct 3100383 TGCT-TTTCGTA-AGACTCGTAAAGTTTTTCAAATTCTTCACCGTAACAATCAGCCAAAC 3100440 Query 63220 TAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 63279 ||| |||| | || |||||||| |||| || || | | | || || ||||| | Sbjct 3100441 CAGGGGATTCGTTGGGGCACATCAAGCACCATTCACCATTTTGTTCAACACGCTTCATGA 3100500 Query 63280 AGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCT 63338 | | || |||||||| ||||| ||| ||||| || | || | | ||| || ||||| Sbjct 3100501 ACAAGTCTGGAATCCATAGAGC-ATAGAATAGTTCACGTGCACGAACTTCTTCTTTTCCG 3100559 Query 63339 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63398 ||| || | ||| | ||| | | | ||| |||||||| ||||| | ||| | | Sbjct 3100560 TGATTTTTGCGTAAATCCAAGAATTCAAACACATCTGAATGCCATGGTTCAACGTAAACG 3100619 Query 63399 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63458 || | | | || || | ||||| ||||| ||||| | || | ||| || | ||| | Sbjct 3100620 GCAAAAGCACCCGGTCTCTTGTTACCTCCTTGATCAACATAACGAGCAGTTGTGTTAAAT 3100679 Query 63459 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCA 63518 || | |||||| || | |||||||| | | || || ||||| | || || ||| Sbjct 3100680 ACACGCAACATAGGTACGATACCGTTACTTGTTCCGTTTGTACCTGCAATGTATGATCCT 3100739 Query 63519 CTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63578 | | ||||| || ||| || || || || ||||| | || || || | ||| Sbjct 3100740 GTTCCGCGAATGTTGTGAATGTTTAATCCGATACCACCTGCACTCTTGGAAATCATTGCA 3100799 Query 63579 CATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63638 || ||| | || ||||| || || || ||| |||||| ||||| || | || Sbjct 3100800 CAAATTTTGAGTGTATCATAAATACCATCAATGGAATCATCTTTCATGGAAACCAAGAAG 3100859 Query 63639 CAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63698 || |||||||| | | | ||| || ||||| || | ||| || || || || ||| Sbjct 3100860 CATGAGGACATTTGTGGTCTTGGAGTACCAGCATTGAAAAGGGTTGGTGATGCATGTGTA 3100919 Query 63699 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGA 63758 || | |||||| | || ||||| || ||||| || | || | ||| | ||| Sbjct 3100920 AAGTACTTTTCACTCAAAAGGTTGTATGTTTCAATTGCAGCATCAACATCTTCTCCGTGA 3100979 Query 63759 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATT 63818 || || || || |||||||| ||||| || || ||||||||| ||| ||| || || Sbjct 3100980 ATACCAACGGCAACACGCATCAACATATGTTGTGGTCTTTCAGCAACTTTTCCATTGATA 3101039 Query 63819 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTCTCG 63877 ||| | ||| ||| ||| | || || |||||||| |||| || || ||| || || Sbjct 3101040 CGCAAAAGGTATGATCGTTCTAGGGTCTTGAAACCAAAGAAGTTATAGTGGAAA-TCACG 3101098 Query 63878 TTCGTAAATAAT-----AACCGAATTGAGCTT-ATCCTT-ATATTTGTTAACTATATCCA 63930 || ||||| || | | ||||| |||| || ||| || ||| | | | | Sbjct 3101099 ATCATAAATGATTGCAGAGTCTAATTGTGCTTGATTCTTCATGATTG----CGTTGT--A 3101152 Query 63931 TGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATA 63990 || | | | ||| || || || || || ||||| |||||||| || | | | | Sbjct 3101153 TGTTGTTTC-TGAGATCATTGGGCTGTGCTTTCCATTGCGTGGATTAACGTATTCGTACA 3101211 Query 63991 AATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATT--TGATATGGC 64048 |||| | || |||| ||| || || ||| || ||||| | ||| ||||| || Sbjct 3101212 AATCTTTGATGACTTGACTGAACGTCTTACGTGTCTCTTTGTGCAAATTGCTGATA--GC 3101269 Query 64049 TATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTT 64107 || | || || | | |||||||| || || ||| || | || || || ||| Sbjct 3101270 AATACGTGCTGCCAAGACAGCATAATCGGGGTGGGTTGTTGT-CTTGTATGCAGCAGTTT 3101328 Query 64108 CGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCT 64167 |||| |||| |||| | ||| |||||||| || |||| || || || | ||| || | Sbjct 3101329 CGGCAGCCAAGTTGTCAAGTTCAACCGTTGTCACACCATCGTAAATACCATCAATGACTT 3101388 Query 64168 TCATAGCTATTTTAATAGGATC 64189 | | | |||| |||||| || Sbjct 3101389 TTCTGGTAATTTCAATAGGGTC 3101410 Score = 194 bits (214), Expect = 2e-44 Identities = 565/862 (66%), Gaps = 16/862 (2%) Strand=Plus/Minus Query 33282 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 33341 || ||||| ||| |||||| | || ||| || || || ||||| ||||| || Sbjct 1008057 ACGCCCATCTTTGAGTATTCGGCAACCTTTTTCTCAAAGAAGTTAGTCTTTCCGGTTAAA 1007998 Query 33342 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAAT 33401 || || || ||||| |||| || || ||||| ||||||| |||| ||||| Sbjct 1007997 GAGATGTTCTCCATCCAATCGAATGGGTTGGTTGCATTGTATGCCTTTTCGTTACCCAA- 1007939 Query 33402 TCAGAAATCAAT---CTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTC 33458 || | |||| | ||| || |||||| || ||| ||||| || | ||| Sbjct 1007938 --AGCCACCAATAGACGATCAGCACAGAATTCAATGTATTGACACATCAATTTGGAGTTC 1007881 Query 33459 ATTCCTATGAGTTTAACTGGAAGAGCCACAGT-AAGAAATTCTTGTTCAATGGATACCGC 33517 ||||| || | || ||| | ||| |||| |||||| | |||||| || || || || Sbjct 1007880 ATTCCGATTAAGTTGCATGGTAAAGCATCAGTTAAGAAACT-TTGTTCGATTGAGACAGC 1007822 Query 33518 ATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACAT 33577 | ||| ||||| | || || || | | | | ||||| | |||| Sbjct 1007821 TTCTGTGATAATCTTGTTCACTGTATCAGGATGAGCGCGCTTACGCAAATGGCTGAACAA 1007762 Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 ||||||||||||||| ||| | ||| || ||||| || || ||||| || || || || Sbjct 1007761 CAAACATGCGAAATCAGTGTGTAAACCTTCATCTCTGCTGATCAATTCATTGGAGAATGT 1007702 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 | |||||||| | |||||||| || ||||| || || |||||||| || || Sbjct 1007701 CAAACCGGGCATCAATCCACGCTTCTTGAGCCAGAAGATACTTGCGAATGAACCACTGAA 1007642 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC---TGTC 33754 |||||| ||||| || |||||||| || | | | || || | ||| | |||| Sbjct 1007641 GAAGATACCTTCAACGGCAGCAAAAGCGACCAAACGTTCAGCAAATGTGGCCCGCTTGTC 1007582 Query 33755 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 | ||||||||| | |||||||| ||||| |||| || || || ||||| || || Sbjct 1007581 AGAAATCCACTTTAGTGCCCAATCTGCCTTTGTTTTGACGACTGGAATTGTTTCAATAGC 1007522 Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874 || || | | | || || | || | || ||||| ||||| | | || Sbjct 1007521 ATCGAACAAGAACTCGCGTTGATCAGGGTCACGGATGTATGTATCAATCAACAAAGAGTA 1007462 Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934 |||| || ||||||||||| || || || || || ||||| ||||| || || | Sbjct 1007461 AGTTTCTGAGTGAATGTTTTCCATCATGATTTGGAAACCATAGAAGCATCTTGCTTCTGC 1007402 Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994 || |||||| | |||||||| | || |||||||| || || |||||| || Sbjct 1007401 TGCTTGAACTTCTCCGCTGAATCGTTCGACCAAGTTTTCATTGACGATACCATCAGAAGC 1007342 Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT--AGT--TTAT 34050 ||||| || ||||| || || || |||| ||||| || ||| | | || | Sbjct 1007341 GGCAAAGAATGCCAAAACGTGAGAGATGAAATGACGTTCGT-TGTCGTTCAACTTGTTGT 1007283 Query 34051 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110 |||||| | | |||||| || | ||| | ||||| | ||||| || || || |||| Sbjct 1007282 CCCAATCGTGCAAATCTTTGGACAAATCAATCTCTTCTGCGGTCCAGAAAGAAGCTTCTG 1007223 Query 34111 CCTTTTTATACATATTCCAGAT 34132 | ||||| ||||| | ||| || Sbjct 1007222 CTTTTTTGTACATTTGCCAAAT 1007201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817143382240