Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2 255 5e-63 >seq2 Length=3834998 Score = 255 bits (282), Expect = 5e-63 Identities = 1138/1776 (64%), Gaps = 35/1776 (2%) Strand=Plus/Plus Query 36796 GTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGC 36855 ||||||| |||| |||| || | | |||| | | ||||| |||| || |||| Sbjct 3099258 GTGAATTGAATAGCGTTTGCGGCAGGTCTTGTACGTAAGTAATAAGTTCCCGTCTTTAAT 3099317 Query 36856 CCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATA 36915 || |||||||||| || |||||||| |||| || | ||||||| || | Sbjct 3099318 CCTTTCTTCCATCCGTAGAAGTGCATACTTGTCAATTGACCAAATGTAGGTGCGCTTAAA 3099377 Query 36916 TATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAA 36975 | || ||| ||||||||| || || || || | ||||||||||| || | Sbjct 3099378 TGGATGTTCAAACTTTGACTTTGGCAAATGAATGCTCCACGATCGGCTGCCATATCAATG 3099437 Query 36976 ATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAA 37035 || ||||||| || |||||||| || || || | | ||| |||| |||||| | Sbjct 3099438 ATTGCTTTTTGACTGATTTCCCAAACGGTCTTGTACAATCTTTTGATATCATCTGGAATT 3099497 Query 37036 TCTAAA---TGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTC 37092 || | | |||||| || ||| ||| | ||| | ||||| || | || | Sbjct 3099498 CCTGGAACGTTTTGAATTGATCCACCATGAGCAATGATTCTGTTCTTCAT-TGTTTCTGA 3099556 Query 37093 CACATATTTCTACTT--ATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTC 37150 | |||| | || || | | | | |||| ||| || ||||| || || |||| Sbjct 3099557 C-CATAGTCCTTGTTCCACCAATGTACGTAATAACCATGGGTTAACAACTTGGAATTCTC 3099615 Query 37151 CAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTAC 37210 | | ||| || | ||||| || || || || | ||||||| | | ||||| | Sbjct 3099616 CTGCTAACACACGCCTTGTGTAGATGTTTGAGGTGAAAGGTTCAAAGCATTCATTGAATC 3099675 Query 37211 TTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATC 37270 ||| |||||| ||||| ||||||||||| ||||| | | || ||| | || | Sbjct 3099676 CTAAAATTTGACTGGTAGAAGCAGTAGGCATGGGTGCCAACAATAGCGAATTACGTAAAC 3099735 Query 37271 CATGTGTATTAATTCTCTT-TTTTAGTTCATTCCAATCCCATAAATCTGTTGG-GTT-CT 37327 | || | | | ||| || |||||||||| ||| | ||||| ||| | ||| ||| | Sbjct 3099736 CGTGC-TCTGCAATCTTTTCTTTTAGTTCAGACCAGTTCCATAGATCGGATGGTGTTACG 3099794 Query 37328 TTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCAT 37387 || |||||| |||||||||| || ||||| || || || | | ||||| |||| Sbjct 3099795 TT--CCACATGTCATATTGTAATTCTCCCTTACTTGCAGGGGATCCCTCGTATGTTTCAT 3099852 Query 37388 AAGGTCCGTAAAT-TTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTT 37446 | | ||| ||| | |||||| | ||||||||| || | || |||| || || ||| Sbjct 3099853 ATGTTCC-TAATTCTTTAGCCAATTCGCAACTTCTCTCCAAAGCAGCATGGTAGATCGTT 3099911 Query 37447 TCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATG-CATAGCCCAATAA 37505 || || ||||| | || ||| | |||||| |||||| | |||| ||||| | Sbjct 3099912 TCAAAGATTTGAACGTTCAATTTGCGTGCTTCGGGTGAATCGAAGGGCATA-CCCAAGAT 3099970 Query 37506 TATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGA 37565 || || |||| || | ||| | || |||||||| || || | || | | ||||| Sbjct 3099971 CATGAATGCATCTGCAAGACCGTTGACTCCGATACCGATAGGACGGTGACGCATGTTAGA 3100030 Query 37566 TCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAAC 37625 ||| | |||| ||||| |||||||||||||| || ||||| || | || | Sbjct 3100031 TCTGCGTGCTTCTTCGACTGGGTAATAATTGATATCAATAATTTTGTTCAAGTTACCACA 3100090 Query 37626 TAGTATTTTCGTAATTATTCTCAACTTGTCGAA--CATAAATACGTTATT-----ATTAA 37678 | | ||| | || | ||||| | ||| ||||| | | || || | || Sbjct 3100091 GATCACTTTGGCAACTGCGTGTAACTTCTTGAAATCATAAGT-CTTTGTTGCAGGGTCAA 3100149 Query 37679 CAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAA 37738 | | | ||| | ||| || | | ||| || || ||||||||||| || Sbjct 3100150 CGTAGGTTGGCAAAGCAATCGAAGCCAAATTGCACACGGCAACTTCATCAGGTGCACAGT 3100209 Query 37739 ATTGTATAATCTCTGTACAGAGATTACTCGATC-TAATTGTTCCCAAATTGCTTTGATTG 37797 ||| ||||| ||||| || | ||| | || | || || |||||||| |||| || Sbjct 3100210 ATTCAATAATTTCTGTGCACAAGTTA-GAGTTCTTGATGGTACCCAAATTCTTTTGGTTA 3100268 Query 37798 GATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCC 37857 |||| | || | |||||| || | || | || | || ||| |||||| Sbjct 3100269 CTTTTTCTGTTTGCTGCATCTTTGTACAACATGAATGGGTTACCAGTTTCAGTTTGAGAT 3100328 Query 37858 TCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATC-GCTTTAAtttttttCTTTG- 37915 || | ||||| | ||| || || |||||| |||| ||||| | | | | ||| Sbjct 3100329 TCAAGAATAGCATACCACAACTTTTGTGCTTT---GATCTTCTTTACATATCTGCCTTGC 3100385 Query 37916 -TTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATAC-ATCGCATAATCCTGG 37973 ||||||| || || || || |||| ||| || || ||| || || || Sbjct 3100386 TTTTCGTAAGACTCGTA-AAGTTTTTCAAATTCTTCACCGTAACAATCAGCCAAACCAGG 3100444 Query 37974 ACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAA 38033 ||||| || ||||| | ||||||| ||| || ||| || || | ||| || || Sbjct 3100445 GGATTCGTTGGGGCACATCAAGCACCATTCACCATTTTGTTCAACACGCTTCATGAACAA 3100504 Query 38034 ATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATT 38093 || || | ||||| ||| |||| || | | | |||||| || || ||| Sbjct 3100505 GTCTGGAATCCATAGAGCATAGAATAGTTCACGTGCACGAACTTCTTCTTTTCCGTGATT 3100564 Query 38094 CTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACAT 38153 || | ||| | || || || | ||| | ||||||||||| | |||| | | Sbjct 3100565 TTTGCGTAAATCCAAGAATTCAAACACATCTGAATGCCATGGTTCAACGTAAACGGCAAA 3100624 Query 38154 TGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCT 38213 || || ||||| || | |||||| |||| || ||| | | | || | ||| ||| | Sbjct 3100625 AGCACCCGGTCTCTTGTTACCTCCTTGATCAACATAACGAGCAGTTGTGTTAAATACACG 3100684 Query 38214 TAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGC 38273 ||||||||||| ||||| ||| | | |||||| |||| | || || | || | | Sbjct 3100685 CAACATAGGTACGATACCGTTACTTGTTCCGTTTGTACCTGCAATGTATGATCCTGTTCC 3100744 Query 38274 TCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTG 38333 || || || || ||||| || ||||||||| || || || | || || Sbjct 3100745 GCGAATGTTGTGAATGTTTAATCCGATACCACCTGCACTCTTGGAAATCATTGCACAAAT 3100804 Query 38334 TTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACT 38393 ||| | |||||| | ||||| || || ||||| || || | | | || || Sbjct 3100805 TTTGAGTGTATCATAAATACCATCAATGGAATCATCTTTCATGGAAACCAAGAAGCATGA 3100864 Query 38394 AGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCA 38453 |||||||| || |||||| || || || || | || || ||||||||| | || | Sbjct 3100865 GGACATTTGTGGTCTTGGAGTACCAGCATTGAAAAGGGTTGGTGATGCATGTGTAAAGTA 3100924 Query 38454 TTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACC 38513 ||||| |||| || |||||||| ||| || |||| | ||| | ||||||||||| Sbjct 3100925 CTTTTCACTCAAAAGGTTGTATGTTTCAATTGCAGCATCAACATCTTCTCCGTGAATACC 3100984 Query 38514 TAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 | | || | ||| | |||||||||||||||||| Sbjct 3100985 AACGGCAACACGCATCAACATATGTTGTGGTCTTTC 3101020 Score = 185 bits (204), Expect = 8e-42 Identities = 388/576 (67%), Gaps = 8/576 (1%) Strand=Plus/Minus Query 11612 AAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGT 11671 ||||| | |||| ||||| || |||||| ||||||||||| ||||| || || | | Sbjct 1007775 AAATGGCTGAACAACAAACATGCGAAATCAGTGTGTAAACCTTCATCTCTGCTGATCAAT 1007716 Query 11672 TCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCA 11731 ||||| || ||||| || |||||||||||||| || || || | ||| || ||| || Sbjct 1007715 TCATTGGAGAATGTCAAACCGGGCATCAATCCACGCTTCTTGAGCCAGAAGATACTTGCG 1007656 Query 11732 AATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT 11791 ||||||||| ||||| || || || || || ||||| || || | | ||| || || Sbjct 1007655 AATGAACCACTGAAGAAGATACCTTCAACGGCAGCAAAAGCGACCAAACGTTCAGCAAAT 1007596 Query 11792 ---ACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCC 11848 || ||| ||| ||||| ||| |||||||| || || |||| ||| | Sbjct 1007595 GTGGCCCGCTTGTCAGAAATCCACTTTAGTGCCCAATCTGCCTTTGTTTTGACGACTGGA 1007536 Query 11849 ATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCT 11908 |||||||| ||||| | || || | || | || | | |||||||| Sbjct 1007535 ATTGTTTCAATAGCATCGAACAAGAACTCGCGTTGATCAGGGTCACGGATGTATGTATCA 1007476 Query 11909 ATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAA 11968 || || ||| || ||||||| ||||| |||||||| ||||| || |||||||| Sbjct 1007475 ATCAACAAAGAGTAAGTTTCTGAGTGAATGTTTTCCATCATGATTTGGAAACCATAGAAG 1007416 Query 11969 CATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACA 12028 |||| ||| |||| || || || | |||| ||| | || || ||||| || Sbjct 1007415 CATCTTGCTTCTGCTGCTTGAACTTCTCCGCTGAATCGTTCGACCAAGTTTTCATTGACG 1007356 Query 12029 ATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTA 12088 ||||||||| || ||||| ||||| | | || || || | ||||| | | Sbjct 1007355 ATACCATCAGAAGCGGCAAAGAATGCCAAAACGTGAGAGATGAAATGACGTTCGT-TGTC 1007297 Query 12089 GTTAA----TTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCA 12144 ||| | || |||||||| | |||||||| || ||||| | ||||| ||||||| Sbjct 1007296 GTTCAACTTGTTGTCCCAATCGTGCAAATCTTTGGACAAATCAATCTCTTCTGCGGTCCA 1007237 Query 12145 AAAACTTGCCACTGATTGTTTATACATTTTCCAGAT 12180 ||| || ||| || ||| ||||||| ||| || Sbjct 1007236 GAAAGAAGCTTCTGCTTTTTTGTACATTTGCCAAAT 1007201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524460319520