Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2 311 1e-79 >seq2 Length=3834998 Score = 311 bits (344), Expect = 1e-79 Identities = 1396/2179 (64%), Gaps = 61/2179 (3%) Strand=Plus/Plus Query 64839 GTGAATTGAATGGGAGCGGATGCG---GGTTTCGTACGTAGATAGTACATTCCCGTTTTT 64895 ||||||||||| |||| |||| ||| | ||||||| || || ||||||| ||| Sbjct 3099258 GTGAATTGAAT---AGCGTTTGCGGCAGGTCTTGTACGTAAGTAATAAGTTCCCGTCTTT 3099314 Query 64896 AGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGC- 64954 | || |||||||||| || |||||||| || | || || || | | | ||| Sbjct 3099315 AATCCTTTCTTCCATCCGTAGAAGTGCATACTTGTCAATT--GACCAAAT-GTAGGTGCG 3099371 Query 64955 --TATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 65012 || |||||| |||| | ||||||||| ||||| ||||| | || || ||||| Sbjct 3099372 CTTAAATGGATGTTCAAACTTTGACTTTGGCAAATGAATGCTCCACGATCGGCTGCCATA 3099431 Query 65013 TTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCT 65072 | ||||| | ||||| |||||||||| || || || | || || ||||| ||| Sbjct 3099432 TCAATGATTGCTTTTTGACTGATTTCCCAAACGGTCTTGTACAATCTTTTGATATCATCT 3099491 Query 65073 GGAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCA 65129 |||| || | || ||||| |||||||||| || || || || ||||| || Sbjct 3099492 GGAATTCCTGGAACGTTTTGAATTGATCCACCATGAGCAATGATTCTGTTCTTCATTGTT 3099551 Query 65130 TCATTCCATAATTTTCTCTCGGTTAAAACTC-TAAGGA-GATGCGGATTAACTACTTGAA 65187 || ||||| | | || || | ||| | || || ||||| ||||| | Sbjct 3099552 TCTGACCATAGTCCTTGTTCCACCAATGTACGTAATAACCAT--GGGTTAACAACTTGGA 3099609 Query 65188 ATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCAT 65247 ||||||| | || || | || ||||| || || ||| | ||||| | | |||| Sbjct 3099610 ATTCTCCTGCTAACACACGCCTTGTGTAGATGTTTGAGGTGAAAGGTTCAAAGCATTCAT 3099669 Query 65248 TATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTC 65307 | ||| ||||||||| || || ||||| ||||| ||||||| ||||| ||| | Sbjct 3099670 TGAATCCTAAAATTTGACTGGTAGAAGCAGTAGGCATGGGTGCCAACAATAGCGAATTAC 3099729 Query 65308 TAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTC---CCAATTCCAAAGATCCGA 65362 | |||| || |||| || || ||||||| |||| ||| ||||| ||||| || Sbjct 3099730 GTAAACCG--TGCTCTGCAATCTTTTCTTTTA---GTTCAGACCAGTTCCATAGATCGGA 3099784 Query 65363 CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATA 65422 ||| || ||||| || ||||| || ||||| | || Sbjct 3099785 TGGTGTTACGTTCCACATGTCATATTGTAATTCTCCCTTACTTGCAGGGGATCCCTCGTA 3099844 Query 65423 TGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATA 65482 ||| || |||| |||| | | ||| | ||| ||||| ||| || ||| | | || Sbjct 3099845 TGTTTCATATGTTCCTAATTCTTTAGCCAATTCGCAACTTCTCTCCAAAGCAGCATGGTA 3099904 Query 65483 AATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATT 65542 || ||||| ||||| | || | | ||||||| | ||| || || | Sbjct 3099905 GATCGTTTCAAAGATTTGAACGTTCAATTTGCGTGCTTCGGGTGAATCGAAGGGCATACC 3099964 Query 65543 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 65602 |||| || || || ||||| | || | || || ||||||||||| | || | | | Sbjct 3099965 CAAGATCATGAATGCATCTGCAAGACCGTTGACTCCGATACCGATAGGACGGTGACGCAT 3100024 Query 65603 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 65662 ||||| | |||||| | || |||||||| ||||| |||||||| || | | | Sbjct 3100025 GTTAGATCTGCGTGCTTCTTCGACTGGGTAATAATTGATATCAATAATTTTGTTCA-AGT 3100083 Query 65663 TCTGACA-ATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCTATTA 65721 | ||| || |||||| | || | | | || |||||| | | | | || Sbjct 3100084 TACCACAGATCACTTTGGCAACTGCGTGTAACTTCTTGAAATCATAAGTC---TTTGTTG 3100140 Query 65722 CA-----AAC--ATGTT--CAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAG 65772 || ||| | ||| ||| |||| || |||| ||| || ||||| || |||| || Sbjct 3100141 CAGGGTCAACGTAGGTTGGCAAAGCAATCGAAGCCAAATTGCACACGGCAACTTCATCAG 3100200 Query 65773 CATCCGCA-TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 65831 | | || |||| || || || ||||| | ||| ||||||||| || ||||| Sbjct 3100201 -GTGCACAGTATTCAATAATTTCTGTGCACAAGTTAGAGTTCTTGATGGTACCCAAATTC 3100259 Query 65832 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 65891 | ||| ||||| ||| |||| ||||| || || | |||||||| ||||||||||| Sbjct 3100260 TTTTGGTTACTTTTTCTGTTTGCTGCATCTTTGTACAACATGAATGGGTTACCAGTTTCA 3100319 Query 65892 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCT- 65950 | |||||||| | ||| || | ||| | | | || || || | | ||||| Sbjct 3100320 GTTTGAGATTCAAGAATAGCATACCACAACTTTTGTGCTTTGATCTTCTTTACATATCTG 3100379 Query 65951 CTTTTCTCTTTCGTATAGTGT-ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCA 66009 | || || ||||||| || | || | | ||| || || || || || || ||| Sbjct 3100380 CCTTGCT-TTTCGTA-AGACTCGTAAAGTTTTTCAAATTCTTCACCGTAACAATCAGCCA 3100437 Query 66010 ATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 66069 | ||||| |||| | || |||||||| |||| || || | | | || || |||| Sbjct 3100438 AACCAGGGGATTCGTTGGGGCACATCAAGCACCATTCACCATTTTGTTCAACACGCTTCA 3100497 Query 66070 TAAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTT 66128 | || | || |||||||| ||||| ||| |||| || | | | | ||| || ||| Sbjct 3100498 TGAACAAGTCTGGAATCCATAGAGC-ATAGAATAGTTCACGTGCACGAACTTCTTCTTTT 3100556 Query 66129 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTAT 66188 || ||| || | ||| | ||| | | | ||| ||||||| ||||| | ||| Sbjct 3100557 CCGTGATTTTTGCGTAAATCCAAGAATTCAAACACATCTGAATGCCATGGTTCAACGTAA 3100616 Query 66189 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 66248 | ||| | | | || || | ||||| ||||| ||||| | || | ||| || | ||| Sbjct 3100617 ACGGCAAAAGCACCCGGTCTCTTGTTACCTCCTTGATCAACATAACGAGCAGTTGTGTTA 3100676 Query 66249 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTT 66308 | || | |||||| || | ||||| || ||| || || || || | || || | Sbjct 3100677 AATACACGCAACATAGGTACGATACCGTTACTTGTTCCGTTTGTACCTGCAATGTATGAT 3100736 Query 66309 CCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 66368 || || | ||||| || ||| || || || || ||||| | || || || | | Sbjct 3100737 CCTGTTCCGCGAATGTTGTGAATGTTTAATCCGATACCACCTGCACTCTTGGAAATCATT 3100796 Query 66369 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 66428 || || ||| | |||||||| || || || || |||||| ||||| || | Sbjct 3100797 GCACAAATTTTGAGTGTATCATAAATACCATCAATGGAATCATCTTTCATGGAAACCAAG 3100856 Query 66429 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 66488 || || |||||||| | | ||| || ||||| || | ||| || || || || Sbjct 3100857 AAGCATGAGGACATTTGTGGTCTTGGAGTACCAGCATTGAAAAGGGTTGGTGATGCATGT 3100916 Query 66489 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGA 66548 ||||| | |||||| | || ||||| || ||||| || | || | ||| | Sbjct 3100917 GTAAAGTACTTTTCACTCAAAAGGTTGTATGTTTCAATTGCAGCATCAACATCTTCTCCG 3100976 Query 66549 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTT 66608 ||||| || || || |||||||| ||||| || || ||||||||| | | || || Sbjct 3100977 TGAATACCAACGGCAACACGCATCAACATATGTTGTGGTCTTTCAGCAACTTTTCCATTG 3101036 Query 66609 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 66667 || ||| | ||| ||| ||| | || || |||||||| |||| || || ||| || Sbjct 3101037 ATACGCAAAAGGTATGATCGTTCTAGGGTCTTGAAACCAAAGAAGTTATAGTGGAAA-TC 3101095 Query 66668 TCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTAC-ATCCATGG 66726 || || ||||| || | |||| | || | | || || | | | | | ||| Sbjct 3101096 ACGATCATAAATGATTGCAGAGTCTAATTGTGCTTGATTCTTCATGATTGCGTTGTATGT 3101155 Query 66727 TAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAAT 66786 | | | ||| || || || || || ||||| ||||| || || | | | |||| Sbjct 3101156 TGTTTC-TGAGATCATTGGGCTGTGCTTTCCATTGCGTGGATTAACGTATTCGTACAAAT 3101214 Query 66787 CCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATT--TGATACGGCTAT 66844 | | || |||| ||| || || ||| |||||||| | ||| ||||| || || Sbjct 3101215 CTTTGATGACTTGACTGAACGTCTTACGTGTCTCTTTGTGCAAATTGCTGATA--GCAAT 3101272 Query 66845 TCTAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGG 66903 | || || | | |||||||| || || ||| || | || || || |||||| Sbjct 3101273 ACGTGCTGCCAAGACAGCATAATCGGGGTGGGTTGTTGT-CTTGTATGCAGCAGTTTCGG 3101331 Query 66904 CTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCA 66963 | |||| |||| | ||| |||||||| || |||| || || || | || || || Sbjct 3101332 CAGCCAAGTTGTCAAGTTCAACCGTTGTCACACCATCGTAAATACCATCAATGACTTTTC 3101391 Query 66964 TAGCTATTTTAATAGGATC 66982 | | |||| |||||| || Sbjct 3101392 TGGTAATTTCAATAGGGTC 3101410 Score = 228 bits (252), Expect = 1e-54 Identities = 578/864 (67%), Gaps = 20/864 (2%) Strand=Plus/Minus Query 35858 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAAT 35917 || ||||| ||| |||||| | || ||| || || || ||||| || || ||| Sbjct 1008057 ACGCCCATCTTTGAGTATTCGGCAACCTTTTTCTCAAAGAAGTTAGTCTTTCCGGTTAAA 1007998 Query 35918 GATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAAT 35977 || || || ||||| |||||||||| ||| | |||| || |||| ||||| Sbjct 1007997 GAGATGTTCTCCATCCAATCGAATGGGTTGGTTGCATTGTATGCCTTTTCGTTACCCAA- 1007939 Query 35978 TCAGAAATCAAT---CTATCTGCGACA-AATTCTATATATGTTTTCATCATTTCACAATT 36033 || | |||| | ||| || ||| ||||| || ||| ||||| || | || Sbjct 1007938 --AGCCACCAATAGACGATCAGC-ACAGAATTCAATGTATTGACACATCAATTTGGAGTT 1007882 Query 36034 CATTCCTAT-AAGTTTAACTGGAAGAGCCACAGT-AAGAAATTCTTGTTCAATAGAGACC 36091 |||||| || ||||| | ||| | ||| |||| |||||| | |||||| || ||||| Sbjct 1007881 CATTCCGATTAAGTTGCA-TGGTAAAGCATCAGTTAAGAAACT-TTGTTCGATTGAGACA 1007824 Query 36092 GCGTCTGTTATAATAGATATTACTGTTTCTTCACTCG-GTGGATACAATAAATGTTTAAA 36150 || ||||| ||||| | ||||| || | | | | ||| ||||| | || Sbjct 1007823 GCTTCTGTGATAATCTTGTTCACTGTATCAGGATGAGCGCGCTTACGC-AAATGGCTGAA 1007765 Query 36151 CATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAA 36210 || ||||||||||||||| ||||| ||| || ||||| || || ||||| ||||| || Sbjct 1007764 CAACAAACATGCGAAATCAGTGTGTAAACCTTCATCTCTGCTGATCAATTCATTGGAGAA 1007705 Query 36211 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGA 36270 || | |||||||| | |||||||| || ||||| || || || ||||| ||| Sbjct 1007704 TGTCAAACCGGGCATCAATCCACGCTTCTTGAGCCAGAAGATACTTGCGAATGAACCACT 1007645 Query 36271 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC---T 36327 ||||| || ||||| || || ||||| || | | | || || | ||| | | Sbjct 1007644 GAAGAAGATACCTTCAACGGCAGCAAAAGCGACCAAACGTTCAGCAAATGTGGCCCGCTT 1007585 Query 36328 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTAT 36387 |||| ||||||||| | |||||||| ||||| |||| || || ||||| || || Sbjct 1007584 GTCAGAAATCCACTTTAGTGCCCAATCTGCCTTTGTTTTGACGACTGGAATTGTTTCAAT 1007525 Query 36388 AGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACT 36447 ||||| || | | | || || | || | |||||||||||||| | | Sbjct 1007524 AGCATCGAACAAGAACTCGCGTTGATCAGGGTCACGGATGTATGTATCAATCAACAAAGA 1007465 Query 36448 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 36507 || |||| || ||||||||||| || ||||| || || ||||| ||||| || || Sbjct 1007464 GTAAGTTTCTGAGTGAATGTTTTCCATCATGATTTGGAAACCATAGAAGCATCTTGCTTC 1007405 Query 36508 GGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 36567 | || |||||| | |||||||| | || |||||||| || || || ||| Sbjct 1007404 TGCTGCTTGAACTTCTCCGCTGAATCGTTCGACCAAGTTTTCATTGACGATACCATCAGA 1007345 Query 36568 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTT-TGGTGTTAGT--TT 36624 || ||||| || ||||| || || || |||| |||||| | || | | || Sbjct 1007344 AGCGGCAAAGAATGCCAAAACGTGAGAGATGAAATGACGTTCGTTGTCGTTCAACTTGTT 1007285 Query 36625 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 36684 | |||||| | | |||||| || | ||| | ||||| | ||||| || || || || Sbjct 1007284 GTCCCAATCGTGCAAATCTTTGGACAAATCAATCTCTTCTGCGGTCCAGAAAGAAGCTTC 1007225 Query 36685 TGCCTTTTTATACATATTCCAGAT 36708 ||| ||||| ||||| | ||| || Sbjct 1007224 TGCTTTTTTGTACATTTGCCAAAT 1007201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172322824720