Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2 383 2e-101 >seq2 Length=3834998 Score = 383 bits (424), Expect = 2e-101 Identities = 1414/2179 (65%), Gaps = 61/2179 (3%) Strand=Plus/Plus Query 78718 GTGAATTGAATGGGAGCGGATGCGG---GTTTCGTACGTAGATAGTACATTCCCGTTTTT 78774 ||||||||||| |||| ||||| || | ||||||| || || ||||||| ||| Sbjct 3099258 GTGAATTGAAT---AGCGTTTGCGGCAGGTCTTGTACGTAAGTAATAAGTTCCCGTCTTT 3099314 Query 78775 AGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGC- 78833 | || ||||||||||||| |||||||| || | || || || | | | ||| Sbjct 3099315 AATCCTTTCTTCCATCCGTAGAAGTGCATACTTGTCAATT--GACCAAAT-GTAGGTGCG 3099371 Query 78834 --TATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 78891 || |||||| |||| | ||||||||| ||||| ||||| | || || ||||| Sbjct 3099372 CTTAAATGGATGTTCAAACTTTGACTTTGGCAAATGAATGCTCCACGATCGGCTGCCATA 3099431 Query 78892 TTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCT 78951 | ||||| | ||||| |||||||||| || || || | || || ||||| ||| Sbjct 3099432 TCAATGATTGCTTTTTGACTGATTTCCCAAACGGTCTTGTACAATCTTTTGATATCATCT 3099491 Query 78952 GGAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCT 79008 |||| || | || ||||| |||||||||| || || || || ||||| || | Sbjct 3099492 GGAATTCCTGGAACGTTTTGAATTGATCCACCATGAGCAATGATTCTGTTCTTCATTGTT 3099551 Query 79009 TCATTCCATAATTTTCTCTCGGTTAAAACTC-TAAGGAG-ATGCGGATTAACTACTTGAA 79066 || ||||| | | || || | ||| | ||| | ||||| ||||| | Sbjct 3099552 TCTGACCATAGTCCTTGTTCCACCAATGTACGTAATAACCATGGG--TTAACAACTTGGA 3099609 Query 79067 ATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCAT 79126 ||||||| | || || | || ||||| || || ||| | ||||| | |||||| Sbjct 3099610 ATTCTCCTGCTAACACACGCCTTGTGTAGATGTTTGAGGTGAAAGGTTCAAAGCATTCAT 3099669 Query 79127 TATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTC 79186 | ||| ||||||||| || || || || ||||| ||||||| ||||| ||| | Sbjct 3099670 TGAATCCTAAAATTTGACTGGTAGAAGCAGTAGGCATGGGTGCCAACAATAGCGAATTAC 3099729 Query 79187 TAAGACCGTATGATCTG--ATTTTATCTTTTAGAGATTC---CCAATCCCAAAGATCAGA 79241 | ||||| | |||| || || |||||||| ||| ||| | ||| ||||| || Sbjct 3099730 GTAAACCGT--GCTCTGCAATCTTTTCTTTTAG---TTCAGACCAGTTCCATAGATCGGA 3099784 Query 79242 CGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTA 79301 || || ||||| | |||||||||| || ||||| || ||||| ||| Sbjct 3099785 TGGTGTTACGTTCCACATGTCATATTGTAATTCTCCCTTACTTGCAGGGGATCCCTCGTA 3099844 Query 79302 TGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATA 79361 ||||||||| | |||| | || || ||||| ||||| ||| || || | | || Sbjct 3099845 TGTTTCATATGTTCCTAATTCTTTAGCCAATTCGCAACTTCTCTCCAAAGCAGCATGGTA 3099904 Query 79362 AATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATT 79421 || ||||| || || | || | | ||||||| | ||| || || | Sbjct 3099905 GATCGTTTCAAAGATTTGAACGTTCAATTTGCGTGCTTCGGGTGAATCGAAGGGCATACC 3099964 Query 79422 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 79481 |||| || || || ||||| | || | || || ||||||||||| | || | | | Sbjct 3099965 CAAGATCATGAATGCATCTGCAAGACCGTTGACTCCGATACCGATAGGACGGTGACGCAT 3100024 Query 79482 ATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 79541 ||||| | |||||| | || |||||||| ||||| |||||||| || | || Sbjct 3100025 GTTAGATCTGCGTGCTTCTTCGACTGGGTAATAATTGATATCAATAATTTTGTTCAAGTT 3100084 Query 79542 CCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATTAC 79601 | || |||||| | || | | || || |||||| | ||| | | || | Sbjct 3100085 ACCACAGATCACTTTGGCAACTGCGTGTAACTTCTTGAAATCATA-AGTC--TTTGTTGC 3100141 Query 79602 A-----AAC--ATGTT--CAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGC 79652 | ||| | ||| ||| || | || |||| ||| || ||||| || |||| || Sbjct 3100142 AGGGTCAACGTAGGTTGGCAAAGCAATCGAAGCCAAATTGCACACGGCAACTTCATCAG- 3100200 Query 79653 ATCCGCA-TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTT 79711 | | || |||| || ||||| ||||| | |||| ||| ||||| || ||||| | Sbjct 3100201 GTGCACAGTATTCAATAATTTCTGTGCACAAGTTAGAGTTCTTGATGGTACCCAAATTCT 3100260 Query 79712 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAA 79771 ||| ||||| ||| |||| ||||| || || | ||||| || ||||||||||| Sbjct 3100261 TTTGGTTACTTTTTCTGTTTGCTGCATCTTTGTACAACATGAATGGGTTACCAGTTTCAG 3100320 Query 79772 TCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTT--TATTATAGACTTGTATCT 79829 | |||||||| | ||| || | ||| | | | || || | || | || ||||| Sbjct 3100321 TTTGAGATTCAAGAATAGCATACCACAACTTTTGTGCTTTGATCTTCTTTAC--ATATCT 3100378 Query 79830 -CTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTA 79888 | || || ||||||| || | | ||| || || || || || ||| | | Sbjct 3100379 GCCTTGCT-TTTCGTAAGACTCGTAAAGTTTTTCAAATTCTTCACCGTAACAATCAGCCA 3100437 Query 79889 ATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCA 79948 | ||||| |||||| || |||||||| |||| || |||| | | || || |||| Sbjct 3100438 AACCAGGGGATTCGTTGGGGCACATCAAGCACCATTCACCATTTTGTTCAACACGCTTCA 3100497 Query 79949 TAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTT 80007 | || | || |||||||| ||||| ||| ||||| || | | | | || || ||| Sbjct 3100498 TGAACAAGTCTGGAATCCATAGAGC-ATAGAATAGTTCACGTGCACGAACTTCTTCTTTT 3100556 Query 80008 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 80067 || ||| || | ||| | ||| | | | ||| |||||||| ||||| | ||| Sbjct 3100557 CCGTGATTTTTGCGTAAATCCAAGAATTCAAACACATCTGAATGCCATGGTTCAACGTAA 3100616 Query 80068 ATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 80127 | ||| | | | ||||||| ||||| ||||| ||||| | || | ||| || | ||| Sbjct 3100617 ACGGCAAAAGCACCCGGTCTCTTGTTACCTCCTTGATCAACATAACGAGCAGTTGTGTTA 3100676 Query 80128 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTT 80187 | || | |||||| || | ||||| || ||| || || || || | || || | Sbjct 3100677 AATACACGCAACATAGGTACGATACCGTTACTTGTTCCGTTTGTACCTGCAATGTATGAT 3100736 Query 80188 CCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 80247 || | | ||||| || ||| || || || || ||||| | || || || | | Sbjct 3100737 CCTGTTCCGCGAATGTTGTGAATGTTTAATCCGATACCACCTGCACTCTTGGAAATCATT 3100796 Query 80248 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGA 80307 || || ||| | |||||||| || || || ||| |||||| ||||| || | Sbjct 3100797 GCACAAATTTTGAGTGTATCATAAATACCATCAATGGAATCATCTTTCATGGAAACCAAG 3100856 Query 80308 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 80367 || || |||||||| | | ||| || ||||| || | ||| || || || || Sbjct 3100857 AAGCATGAGGACATTTGTGGTCTTGGAGTACCAGCATTGAAAAGGGTTGGTGATGCATGT 3100916 Query 80368 GTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGA 80427 ||||| | |||||| || || ||||| || ||||| || | || | ||| | Sbjct 3100917 GTAAAGTACTTTTCACTCAAAAGGTTGTATGTTTCAATTGCAGCATCAACATCTTCTCCG 3100976 Query 80428 TGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTT 80487 ||||| || || || |||||||| ||||| || || ||||||||| | | || ||| Sbjct 3100977 TGAATACCAACGGCAACACGCATCAACATATGTTGTGGTCTTTCAGCAACTTTTCCATTG 3101036 Query 80488 ATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 80546 || ||| | ||| ||| ||| | || || |||||||| |||| || || ||| || Sbjct 3101037 ATACGCAAAAGGTATGATCGTTCTAGGGTCTTGAAACCAAAGAAGTTATAGTGGAAA-TC 3101095 Query 80547 TCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTAC-ATCCATGG 80605 || || ||||| || | |||| | || | | || || | | | | | ||| Sbjct 3101096 ACGATCATAAATGATTGCAGAGTCTAATTGTGCTTGATTCTTCATGATTGCGTTGTATGT 3101155 Query 80606 TGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAAT 80665 || | | ||| || || || || || ||||| |||||||| || | | | |||| Sbjct 3101156 TGTTTC-TGAGATCATTGGGCTGTGCTTTCCATTGCGTGGATTAACGTATTCGTACAAAT 3101214 Query 80666 CCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATT--TGATACGGCTAT 80723 | | || |||| ||| || || ||| || ||||| | ||| ||||| || || Sbjct 3101215 CTTTGATGACTTGACTGAACGTCTTACGTGTCTCTTTGTGCAAATTGCTGATA--GCAAT 3101272 Query 80724 TCTGGCGGCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGG 80782 | || || || | |||||||| || || ||| || | || || || |||||| Sbjct 3101273 ACGTGCTGCCAAGACAGCATAATCGGGGTGGGTTGTTGT-CTTGTATGCAGCAGTTTCGG 3101331 Query 80783 CTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCA 80842 | |||| |||| | ||| |||||||| || |||| || || || | || || || Sbjct 3101332 CAGCCAAGTTGTCAAGTTCAACCGTTGTCACACCATCGTAAATACCATCAATGACTTTTC 3101391 Query 80843 TAGCTATTTTAATAGGATC 80861 | | |||| |||||| || Sbjct 3101392 TGGTAATTTCAATAGGGTC 3101410 Score = 203 bits (224), Expect = 5e-47 Identities = 574/867 (66%), Gaps = 26/867 (3%) Strand=Plus/Minus Query 49660 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 49719 || ||||| ||| |||||| | || ||| || || || ||||| ||||| || Sbjct 1008057 ACGCCCATCTTTGAGTATTCGGCAACCTTTTTCTCAAAGAAGTTAGTCTTTCCGGTTAAA 1007998 Query 49720 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 49779 || || || ||||| |||| || || ||||| |||| || |||| ||||| Sbjct 1007997 GAGATGTTCTCCATCCAATCGAATGGGTTGGTTGCATTGTATGCCTTTTCGTTACCCAA- 1007939 Query 49780 TCAGAAATCAAT---CTATCCGCGACA-AATTCTATATATGTTTTCATCATTTCACAATT 49835 || | |||| | ||| || ||| ||||| || ||| ||||| || | || Sbjct 1007938 --AGCCACCAATAGACGATCAGC-ACAGAATTCAATGTATTGACACATCAATTTGGAGTT 1007882 Query 49836 CATTCCTAT-AAGTTTAACTGGAAGAGCCGCAGT-AAGAAATTCTTGTTCAATGGATACC 49893 |||||| || ||||| | ||| | ||| |||| |||||| | |||||| || || || Sbjct 1007881 CATTCCGATTAAGTTGCA-TGGTAAAGCATCAGTTAAGAAACT-TTGTTCGATTGAGACA 1007824 Query 49894 GCATCTGTTATAATAGATCTAACGGTTTCTTCA----CTCGGTGGATGCAATAAATGTTT 49949 || ||||| ||||| | || || || | | || | | |||| ||| | Sbjct 1007823 GCTTCTGTGATAATCTTGTTCACTGTATCAGGATGAGCGCGCTT-ACGCAA---ATGGCT 1007768 Query 49950 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGA 50009 |||| ||||||||||||||| ||| | ||| || ||||| || || | ||| ||||| Sbjct 1007767 GAACAACAAACATGCGAAATCAGTGTGTAAACCTTCATCTCTGCTGATCAATTCATTGGA 1007708 Query 50010 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCC 50069 || || | |||||||| | |||||||| || ||||| || || || ||||| || Sbjct 1007707 GAATGTCAAACCGGGCATCAATCCACGCTTCTTGAGCCAGAAGATACTTGCGAATGAACC 1007648 Query 50070 AGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC- 50128 | |||||||| ||||| || || ||||| || || | | || || | |||| | Sbjct 1007647 ACTGAAGAAGATACCTTCAACGGCAGCAAAAGCGACCAAACGTTCAGCAAATGTGGCCCG 1007588 Query 50129 --TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 50186 ||||| ||||||||| | |||||||| ||||| |||| || || || ||||| Sbjct 1007587 CTTGTCAGAAATCCACTTTAGTGCCCAATCTGCCTTTGTTTTGACGACTGGAATTGTTTC 1007528 Query 50187 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 50246 || |||| || | | | || || | || | || ||||| ||||| | Sbjct 1007527 AATAGCATCGAACAAGAACTCGCGTTGATCAGGGTCACGGATGTATGTATCAATCAACAA 1007468 Query 50247 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 50306 | || |||| || ||||||||||| || || || || || ||||| ||||| || Sbjct 1007467 AGAGTAAGTTTCTGAGTGAATGTTTTCCATCATGATTTGGAAACCATAGAAGCATCTTGC 1007408 Query 50307 CTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTC 50366 || | || |||||| | |||||||| | || |||||||| || || || || Sbjct 1007407 TTCTGCTGCTTGAACTTCTCCGCTGAATCGTTCGACCAAGTTTTCATTGACGATACCATC 1007348 Query 50367 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTG-GGTGTTAGT- 50424 | || ||||| || ||||| || || || ||||| ||||||| || | | Sbjct 1007347 AGAAGCGGCAAAGAATGCCAAAACGTGAGAGATGAAATGACGTTCGTTGTCGTTCAACTT 1007288 Query 50425 -TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 50483 || | |||||| | | |||||| || | ||| | ||||| | ||||| || || || Sbjct 1007287 GTTGTCCCAATCGTGCAAATCTTTGGACAAATCAATCTCTTCTGCGGTCCAGAAAGAAGC 1007228 Query 50484 CTCTGCCTTTTTATACATATTCCAGAT 50510 ||||| ||||| ||||| | ||| || Sbjct 1007227 TTCTGCTTTTTTGTACATTTGCCAAAT 1007201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268279255120