Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2 194 2e-44 >seq2 Length=3834998 Score = 194 bits (214), Expect = 2e-44 Identities = 562/860 (65%), Gaps = 9/860 (1%) Strand=Plus/Minus Query 13572 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13631 |||||||| ||| ||||| ||| |||| |||||||||||||| || || | Sbjct 1008057 ACGCCCATCTTTGAGTATTCGGCAACCTTTTTCTCAAAGAAGTTAGTCTTTCCGGTTAAA 1007998 Query 13632 GATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGT 13691 || || || ||||| |||| ||||| || ||| | | | || || ||| | Sbjct 1007997 GAGATGTTCTCCATCCAATCGAATGGGTTGGTTGCATTGTATGCCTTTTCGTTACCCAAA 1007938 Query 13692 TCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATA 13751 | | | || | ||||||| || ||||| |||||| |||| || | | ||||| Sbjct 1007937 GCCACCAATAGACGATCAGCACAGAATTCAATGTATTGACACATCAATTTGGAGTTCATT 1007878 Query 13752 CCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCT 13811 || |||| || || | || ||||| || || ||| || || ||||| ||| Sbjct 1007877 CCGATTAAGTTGCATGGTAAAGCATCAGTTAAGAAACTTTGTTCGATTGAGACAGCTTCT 1007818 Query 13812 TTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAG---ATGTTTAAAAATT 13868 | ||||| |||| | | | || || | ||| || | ||| | || | Sbjct 1007817 GTGATAATC-TTGTTC-ACTGT-ATCAGGATGAGCGCGCTTACGCAAATGGCTGAACAAC 1007761 Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 ||||| || |||||| || | || |||||||| || || | ||| || || ||||| Sbjct 1007760 AAACATGCGAAATCAGTGTGTAAACCTTCATCTCTGCTGATCAATTCATTGGAGAATGTC 1007701 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAG 13988 || || ||||||||||| || || || | ||| || || || ||||| || ||| Sbjct 1007700 AAACCGGGCATCAATCCACGCTTCTTGAGCCAGAAGATACTTGCGAATGAACCACTGAAG 1007641 Query 13989 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14048 || || || ||||| |||||||| || | || ||||| |||| | || |||| Sbjct 1007640 AAGATACCTTCAACGGCAGCAAAAGCGACCAAACGTTCAGCAAATGTGGCCCGCTTGTCA 1007581 Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108 || ||||| ||| ||||| || | ||| |||| | | ||||||||||||||| Sbjct 1007580 GAAATCCACTTTAGTGCCCAATCTGCCTTTGTTTTGACGACTGGAATTGTTTCAATAGCA 1007521 Query 14109 TTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14168 | || || | || | | || |||||||||||||| | || || Sbjct 1007520 TCGAACAAGAACTCGCGTTGATCAGGGTCACGGATGTATGTATCAATCAACAAAGAGTAA 1007461 Query 14169 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGAC 14228 |||| ||||| ||||||||||| || || |||||||| |||||||| ||||| | Sbjct 1007460 GTTTCTGAGTGAATGTTTTCCATCATGATTTGGAAACCATAGAAGCATCTTGCTTCTGCT 1007401 Query 14229 CATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCT 14288 ||| ||||| | |||| |||| |||| |||||||| || ||||||||| ||| Sbjct 1007400 GCTTGAACTTCTCCGCTGAATCGTTCGACCAAGTTTTCATTGACGATACCATCAGAAGCG 1007341 Query 14289 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTT---C 14345 ||||| |||||||| | || || || | | || | | ||| | || || | Sbjct 1007340 GCAAAGAATGCCAAAACGTGAGAGATGAAATGACGTTCGTTGTCGTTCAACTTGTTGTCC 1007281 Query 14346 CAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCT 14405 |||||| ||||| || || | ||| | || || | ||||| ||| ||| | ||| Sbjct 1007280 CAATCGTGCAAATCTTTGGACAAATCAATCTCTTCTGCGGTCCAGAAAGAAGCTTCTGCT 1007221 Query 14406 TTTTTATACATTACCCATAT 14425 ||||| |||||| ||| || Sbjct 1007220 TTTTTGTACATTTGCCAAAT 1007201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727652197200