Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2 192 6e-44 >seq2 Length=3834998 Score = 192 bits (212), Expect = 6e-44 Identities = 562/861 (65%), Gaps = 11/861 (1%) Strand=Plus/Minus Query 13360 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGT 13419 |||||||| ||| ||||| ||| |||| ||||| |||||||| || || | Sbjct 1008057 ACGCCCATCTTTGAGTATTCGGCAACCTTTTTCTCAAAGAAGTTAGTCTTTCCGGTTAAA 1007998 Query 13420 GATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGT 13479 || || || ||||| |||||||||| || |||| | | | || || ||| | Sbjct 1007997 GAGATGTTCTCCATCCAATCGAATGGGTTGGTTGCATTGTATGCCTTTTCGTTACCCAAA 1007938 Query 13480 TCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATA 13539 | | |||| | ||||||| || ||||| |||||| |||| || | | ||||| Sbjct 1007937 GCCACCAATAGACGATCAGCACAGAATTCAATGTATTGACACATCAATTTGGAGTTCATT 1007878 Query 13540 CCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCG 13599 || |||| || || | || |||||| || || ||| || || ||||| || Sbjct 1007877 CCGATTAAGTTGCATGGTAAAGCATCAGTTAAGAAACTTTGTTCGATTGAGACAGCTTC- 1007819 Query 13600 TTTATAATAATCTTAATAA-TGTCATTAGAAGGAGGATATTTTAG---ATGTTTAAAAAT 13655 | | |||||||| | | ||| || || | ||| || | ||| | || | Sbjct 1007818 --TGTGATAATCTTGTTCACTGT-ATCAGGATGAGCGCGCTTACGCAAATGGCTGAACAA 1007762 Query 13656 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13715 ||||| || |||||| || | || |||||||| || || | ||| || || ||||| Sbjct 1007761 CAAACATGCGAAATCAGTGTGTAAACCTTCATCTCTGCTGATCAATTCATTGGAGAATGT 1007702 Query 13716 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAA 13775 || || ||||||||||| || || || | ||| || || |||||||| || || Sbjct 1007701 CAAACCGGGCATCAATCCACGCTTCTTGAGCCAGAAGATACTTGCGAATGAACCACTGAA 1007642 Query 13776 GAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTT 13835 ||| || || ||||| |||||||| || | | ||||| |||| | || |||| Sbjct 1007641 GAAGATACCTTCAACGGCAGCAAAAGCGACCAAACGTTCAGCAAATGTGGCCCGCTTGTC 1007582 Query 13836 TGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGC 13895 || ||||| ||| ||||| || | ||| |||| | | |||||||| || || Sbjct 1007581 AGAAATCCACTTTAGTGCCCAATCTGCCTTTGTTTTGACGACTGGAATTGTTTCAATAGC 1007522 Query 13896 ATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 13955 || ||| || || | | || |||||||||||||| | || || Sbjct 1007521 ATCGAACAAGAACTCGCGTTGATCAGGGTCACGGATGTATGTATCAATCAACAAAGAGTA 1007462 Query 13956 CATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGA 14015 |||| ||||| |||||||| || || || |||||||| || ||||| ||||||| Sbjct 1007461 AGTTTCTGAGTGAATGTTTTCCATCATGATTTGGAAACCATAGAAGCATCTTGCTTCTGC 1007402 Query 14016 CCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGC 14075 ||| || || | |||| ||| ||||||||||||| || ||||||||| ||| Sbjct 1007401 TGCTTGAACTTCTCCGCTGAATCGTTCGACCAAGTTTTCATTGACGATACCATCAGAAGC 1007342 Query 14076 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTT--- 14132 ||||| |||||||| | || || || | | || | | ||| | || || Sbjct 1007341 GGCAAAGAATGCCAAAACGTGAGAGATGAAATGACGTTCGTTGTCGTTCAACTTGTTGTC 1007282 Query 14133 CCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGC 14192 ||||||| ||||| || || | ||| | || || | ||||| ||| ||| | || Sbjct 1007281 CCAATCGTGCAAATCTTTGGACAAATCAATCTCTTCTGCGGTCCAGAAAGAAGCTTCTGC 1007222 Query 14193 TTTTTTATACATTACCCATAT 14213 |||||| |||||| ||| || Sbjct 1007221 TTTTTTGTACATTTGCCAAAT 1007201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478588453023120