Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2 297 3e-75 >seq2 Length=3834998 Score = 297 bits (328), Expect = 3e-75 Identities = 1344/2111 (64%), Gaps = 59/2111 (3%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||||||||| || |||||||| || | || | | |||| || || || || | Sbjct 3099325 TCCATCCGTAGAAGTGCATACTTGTCAATTGACCAAATGTAGGTGCGCTTAAATGGATGT 3099384 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| |||||||| ||||| ||||| | || || ||||| | ||||| | | Sbjct 3099385 TCAAACTTTGACTTTGGCAAATGAATGCTCCACGATCGGCTGCCATATCAATGATTGCTT 3099444 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTA- 71046 |||| |||||||||| || || || | || || ||||| ||||||| || | Sbjct 3099445 TTTGACTGATTTCCCAAACGGTCTTGTACAATCTTTTGATATCATCTGGAATTCCTGGAA 3099504 Query 71047 --TTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATT 71104 || ||||| |||||||||| ||||| || || || || || ||| ||||| | Sbjct 3099505 CGTTTTGAATTGATCCACCATGAGCAATGATTCTGTTCTTCATTGTTTCTGACCATAGTC 3099564 Query 71105 TTCTCTCGGTTAAAACTCTAAGGAGATGA----GGATTAACTACTTGAAATTCTCCAGAC 71160 | || || | || | | || | || ||||| ||||| |||||||| | Sbjct 3099565 CTTGTTCCACCAA---TGTACGTA-ATAACCATGGGTTAACAACTTGGAATTCTCCTGCT 3099620 Query 71161 AATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAA 71220 || || | | ||||| || || ||| | ||||| | | ||||| ||| ||| Sbjct 3099621 AACACACGCCTTGTGTAGATGTTTGAGGTGAAAGGTTCAAAGCATTCATTGAATCCTAAA 3099680 Query 71221 ATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGT 71280 |||||| || || ||||| ||||| ||||||| |||||| ||| | | ||| || Sbjct 3099681 ATTTGACTGGTAGAAGCAGTAGGCATGGGTGCCAACAATAGCGAATTACGTAAACC--GT 3099738 Query 71281 GATCGG--ATTTTATCTTTTAGAGATTC---CCAATTCCAAAGATCCGATGGTACAACNN 71335 | || | || || |||||||| ||| ||| ||||| ||||| |||||| || Sbjct 3099739 GCTCTGCAATCTTTTCTTTTAG---TTCAGACCAGTTCCATAGATCGGATGGTGTTACGT 3099795 Query 71336 NNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATG 71395 || ||||| || ||||| | ||||| || |||| Sbjct 3099796 TCCACATGTCATATTGTAATTCTCCCTTACTTGCAGGGGATCCCTCGTATGTTTCATATG 3099855 Query 71396 GTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGA 71455 |||| || || || | ||| ||||| ||| || || ||| || || ||||| | Sbjct 3099856 TTCCTAATTCTTTAGCCAATTCGCAACTTCTCTCCAAAGCAGCATGGTAGATCGTTTCAA 3099915 Query 71456 AAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAA 71515 | || | || | | ||||||| || ||| || || | |||| || | Sbjct 3099916 AGATTTGAACGTTCAATTTGCGTGCTTCGGGTGAATCGAAGGGCATACCCAAGATCATGA 3099975 Query 71516 ACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTT 71575 | || ||||| | || | || || ||||||||||| | ||| | | | ||||| | Sbjct 3099976 ATGCATCTGCAAGACCGTTGACTCCGATACCGATAGGACGGTGACGCATGTTAGATCTGC 3100035 Query 71576 CAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTA 71635 |||||| | || |||||||| ||||| |||||||| || | || | || | Sbjct 3100036 GTGCTTCTTCGACTGGGTAATAATTGATATCAATAATTTTGTTCAAGTTACCACAGATCA 3100095 Query 71636 CTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTATTACA-----AAC-- 71688 ||||| | || | | || || |||||| | || | | || || ||| Sbjct 3100096 CTTTGGCAACTGCGTGTAACTTCTTGAAATCATAAGTC---TTTGTTGCAGGGTCAACGT 3100152 Query 71689 ACGTT--CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATT 71746 | ||| ||| |||| || |||| ||| || ||||| || |||| || | |||| Sbjct 3100153 AGGTTGGCAAAGCAATCGAAGCCAAATTGCACACGGCAACTTCATCAGGTGCACAGTATT 3100212 Query 71747 GTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCT 71806 |||||||| ||||| | ||| ||||||||| || ||||| | ||| ||||| | Sbjct 3100213 CAATAATTTCTGTGCACAAGTTAGAGTTCTTGATGGTACCCAAATTCTTTTGGTTACTTT 3100272 Query 71807 TTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTA 71866 || |||| ||||| || || | || || || ||||||||||| | |||||||| | Sbjct 3100273 TTCTGTTTGCTGCATCTTTGTACAACATGAATGGGTTACCAGTTTCAGTTTGAGATTCAA 3100332 Query 71867 TAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCT-CTTTTCTCTTTCG 71925 ||| || | ||| | | | || || || | || ||||| | || || ||||| Sbjct 3100333 GAATAGCATACCACAACTTTTGTGCTTTGATCTTCTTTACATATCTGCCTTGCT-TTTCG 3100391 Query 71926 TATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCA 71985 || || | | ||| || || || || || || | || ||||| |||| Sbjct 3100392 TAAGACTCGTAAAGTTTTTCAAATTCTTCACCGTAACAATCAGCCAAACCAGGGGATTCG 3100451 Query 71986 TTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGA 72045 || || |||||||| |||| || |||| | | || || ||||| || | || ||| Sbjct 3100452 TTGGGGCACATCAAGCACCATTCACCATTTTGTTCAACACGCTTCATGAACAAGTCTGGA 3100511 Query 72046 ATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTT 72104 ||||| ||||| ||| ||||| || | | | | || || ||||| ||| || Sbjct 3100512 ATCCATAGAGC-ATAGAATAGTTCACGTGCACGAACTTCTTCTTTTCCGTGATTTTTGCG 3100570 Query 72105 AAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCC 72164 | ||| | ||| | | | ||| |||||||| ||||| | ||| | ||| | | | || Sbjct 3100571 TAAATCCAAGAATTCAAACACATCTGAATGCCATGGTTCAACGTAAACGGCAAAAGCACC 3100630 Query 72165 CGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 72224 ||| | ||||| ||||| ||||| | || | ||| || | ||| | || | |||||| Sbjct 3100631 CGGTCTCTTGTTACCTCCTTGATCAACATAACGAGCAGTTGTGTTAAATACACGCAACAT 3100690 Query 72225 TGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT 72284 || | ||||| || || || || || || | || || ||| | | ||||| Sbjct 3100691 AGGTACGATACCGTTACTTGTTCCGTTTGTACCTGCAATGTATGATCCTGTTCCGCGAAT 3100750 Query 72285 ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 72344 ||| ||| || || || || ||||| | || || || | ||| || ||| | Sbjct 3100751 GTTGTGAATGTTTAATCCGATACCACCTGCACTCTTGGAAATCATTGCACAAATTTTGAG 3100810 Query 72345 CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACAT 72404 |||||||| || || || || |||||| ||||| || | || || ||||| Sbjct 3100811 TGTATCATAAATACCATCAATGGAATCATCTTTCATGGAAACCAAGAAGCATGAGGACAT 3100870 Query 72405 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 72464 ||| | | ||| || ||||| || | ||| || || || || ||||| | ||||| Sbjct 3100871 TTGTGGTCTTGGAGTACCAGCATTGAAAAGGGTTGGTGATGCATGTGTAAAGTACTTTTC 3100930 Query 72465 AGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGC 72524 | || || ||||| || ||||| || | || | ||| | || || || || || Sbjct 3100931 ACTCAAAAGGTTGTATGTTTCAATTGCAGCATCAACATCTTCTCCGTGAATACCAACGGC 3100990 Query 72525 GACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTA 72584 |||||||| |||||||| || ||||||||| | | || ||| || ||| | ||| Sbjct 3100991 AACACGCATCAACATATGTTGTGGTCTTTCAGCAACTTTTCCATTGATACGCAAAAGGTA 3101050 Query 72585 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTCTCGTTCGTAAATAA 72643 ||| ||| | || || |||||||| |||| || || ||| || || || ||||| | Sbjct 3101051 TGATCGTTCTAGGGTCTTGAAACCAAAGAAGTTATAGTGGAAA-TCACGATCATAAATGA 3101109 Query 72644 T-----AACCGAATTGAG-TTTATCCTT-ATATTTGTTAACTATATCCATGGTGATACTT 72696 | | | ||||| | || || ||| || ||| | | | ||| || | | | Sbjct 3101110 TTGCAGAGTCTAATTGTGCTTGATTCTTCATGATTG----CGTTGT--ATGTTGTTTC-T 3101162 Query 72697 GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATC 72756 || || || || || || ||||| |||||||| || | | | ||||| | || Sbjct 3101163 GAGATCATTGGGCTGTGCTTTCCATTGCGTGGATTAACGTATTCGTACAAATCTTTGATG 3101222 Query 72757 ACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATT--TGATACGGCTATTCTGGCGG 72814 |||| ||| || || ||| || ||||| | ||| ||||| || || | || | Sbjct 3101223 ACTTGACTGAACGTCTTACGTGTCTCTTTGTGCAAATTGCTGATA--GCAATACGTGCTG 3101280 Query 72815 CTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCTGCTGCCAGA 72873 | | | |||||||| || || ||| || | || || || |||| || |||| Sbjct 3101281 CCAAGACAGCATAATCGGGGTGGGTTGTTGT-CTTGTATGCAGCAGTTTCGGCAGCCAAG 3101339 Query 72874 GTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATT 72933 |||| | ||| |||||||| || |||| || || || | || || || | | ||| Sbjct 3101340 TTGTCAAGTTCAACCGTTGTCACACCATCGTAAATACCATCAATGACTTTTCTGGTAATT 3101399 Query 72934 TTAATAGGATC 72944 | |||||| || Sbjct 3101400 TCAATAGGGTC 3101410 Score = 237 bits (262), Expect = 2e-57 Identities = 579/864 (67%), Gaps = 20/864 (2%) Strand=Plus/Minus Query 41765 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAAT 41824 || ||||| ||| |||||| | || ||| || || || ||||||||||| || Sbjct 1008057 ACGCCCATCTTTGAGTATTCGGCAACCTTTTTCTCAAAGAAGTTAGTCTTTCCGGTTAAA 1007998 Query 41825 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 41884 || || || ||||| |||| || || ||||| |||| || |||| ||||| Sbjct 1007997 GAGATGTTCTCCATCCAATCGAATGGGTTGGTTGCATTGTATGCCTTTTCGTTACCCAA- 1007939 Query 41885 TCAGAAATCAAT---CTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTC 41941 || | |||| | ||| || |||||| || ||| ||||| || | ||| Sbjct 1007938 --AGCCACCAATAGACGATCAGCACAGAATTCAATGTATTGACACATCAATTTGGAGTTC 1007881 Query 41942 ATTCCTAT-AAGTTTAACTGGAAGAGCCACAGT-AAGAAATTCTTGTTCAATAGAGACCG 41999 ||||| || ||||| | ||| | ||| |||| |||||| | |||||| || ||||| | Sbjct 1007880 ATTCCGATTAAGTTGCA-TGGTAAAGCATCAGTTAAGAAACT-TTGTTCGATTGAGACAG 1007823 Query 42000 CGTCTGTTATAATAGATCTTACTGTTTCTTCACTCG-GTGGATACAATAAATGTTTAAAC 42058 | ||||| ||||| | ||||| || | | | | ||| ||||| | ||| Sbjct 1007822 CTTCTGTGATAATCTTGTTCACTGTATCAGGATGAGCGCGCTTACGC-AAATGGCTGAAC 1007764 Query 42059 ATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAAC 42118 | ||||||||||||||| ||| | ||| |||||||| || || ||||| ||||| || Sbjct 1007763 AACAAACATGCGAAATCAGTGTGTAAACCTTCATCTCTGCTGATCAATTCATTGGAGAAT 1007704 Query 42119 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAA 42178 || | |||||||| | |||||||| || ||||| || ||| || ||||| ||| Sbjct 1007703 GTCAAACCGGGCATCAATCCACGCTTCTTGAGCCAGAAGATACTTGCGAATGAACCACTG 1007644 Query 42179 AAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC---TG 42235 |||||||| ||||| || || ||||| || | | | || || | ||| | || Sbjct 1007643 AAGAAGATACCTTCAACGGCAGCAAAAGCGACCAAACGTTCAGCAAATGTGGCCCGCTTG 1007584 Query 42236 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 42295 ||| ||||||||| | |||||||| ||||| |||| || || || ||||| || Sbjct 1007583 TCAGAAATCCACTTTAGTGCCCAATCTGCCTTTGTTTTGACGACTGGAATTGTTTCAATA 1007524 Query 42296 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTA 42355 |||| || | | | || || | || | |||||||| ||||| | | Sbjct 1007523 GCATCGAACAAGAACTCGCGTTGATCAGGGTCACGGATGTATGTATCAATCAACAAAGAG 1007464 Query 42356 TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCG 42415 || ||||||| ||||||||||| || || || || || ||||| ||||| || || Sbjct 1007463 TAAGTTTCTGAGTGAATGTTTTCCATCATGATTTGGAAACCATAGAAGCATCTTGCTTCT 1007404 Query 42416 GTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTG 42475 | | || |||||| | |||||||| | || ||||| || || || || ||| Sbjct 1007403 GCTGCTTGAACTTCTCCGCTGAATCGTTCGACCAAGTTTTCATTGACGATACCATCAGAA 1007344 Query 42476 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTT-AATTTATT 42534 || ||||| || ||||| || || || |||| ||||| | ||| || || || Sbjct 1007343 GCGGCAAAGAATGCCAAAACGTGAGAGATGAAATGACGTTCGT-TGTCGTTCAACTTGTT 1007285 Query 42535 ---CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTC 42591 |||||| | | |||||| || | ||| | |||||| | ||||| || || ||||| Sbjct 1007284 GTCCCAATCGTGCAAATCTTTGGACAAATCAATCTCTTCTGCGGTCCAGAAAGAAGCTTC 1007225 Query 42592 TGCCTTTTTATACATATTCCAGAT 42615 ||| ||||| ||||| | ||| || Sbjct 1007224 TGCTTTTTTGTACATTTGCCAAAT 1007201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138713424080