Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2 147 3e-30 seq4 86.0 9e-12 >seq2 Length=3834998 Score = 147 bits (162), Expect = 3e-30 Identities = 553/853 (65%), Gaps = 31/853 (4%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| ||||||||||||| || | || || || ||||| | |||||| | ||| || Sbjct 1007201 ATTTGGCAAATGTACAAAAAAGCAGAAGCTTCTTTCTGGACCGCAGAAGAGATTGATTTG 1007260 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||| || || |||||||||| | |||| || | || || | || || || Sbjct 1007261 TCCAAAGATTTGCACGATTGGGACAACAAGTTGAACGACAACGAACGTCATTTCATCTCT 1007320 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| ||||||| |||||||||| || ||||| |||||||| || || || | |||| Sbjct 1007321 CACGTTTTGGCATTCTTTGCCGCTTCTGATGGTATCGTCAATGAAAACTTGGTCGAACGA 1007380 Query 125199 TTC-TCTCAAGAGTT-GACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGA 125256 ||| | | |||| | || |||| | ||||| || || ||||||||||||| Sbjct 1007381 TTCAGCGGAGAAGTTCAAGCA--GCAGAAGCAAGATGCTTCTATGGTTTCCAAATCATGA 1007438 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC-- 125314 | || ||| | ||||| |||| |||||| ||||||| | ||||| || || || Sbjct 1007439 TGGAAAACATTCACTCAGAAACTTACTCTTTGTTGATTGATACATACATCCGTGACCCTG 1007498 Query 125315 -GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGT----GCCGTCTATACGTAAA 125369 ||||| | | || || | || || || || | | |||| | || | Sbjct 1007499 ATCAACGCGAGTTCTTG---TTCGATGCTATTGAAACAATTCCAGTCGTCAAAAC----A 1007551 Query 125370 AAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTG 125429 ||||| | |||| | |||||| |||| | | | | | || || | || Sbjct 1007552 AAGGCAGATTGGGCACTAAAGTGGATTTCTGACAAGCGGGCCACATTTGCTGAACGTTTG 1007611 Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 || || || || ||||| || || |||||||| ||| || || ||||| ||| Sbjct 1007612 GTCGCTTTTGCTGCCGTTGAAGGTATCTTCTTCAGTGGTTCATTCGCAAGTATCTTCTGG 1007671 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 ||||||||||| ||| | |||||||| |||| | || || || || |||| Sbjct 1007672 CTCAAGAAGCGTGGATTGATGCCCGGTTTGACATTCTCCAATGAATTGATCAGCAGAGAT 1007731 Query 125550 GAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGC 125609 || || ||||| ||| ||| ||| | |||| || | || ||||| | | || Sbjct 1007732 GAAGGTTTACACACTGA-TTTCGCATGTT--TGTTGTTCAGCCATTTGCGT-AAGCGCGC 1007787 Query 125610 AGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAG 125669 |||| ||| | || | ||| ||| | || || || || || |||||| || Sbjct 1007788 TCATCC-----TGATACAGTGAACAAGATTATCACAGAAGCTGTCTCAATCGAACAA-AG 1007841 Query 125670 TTTC-TAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGA 125728 |||| |||| || | |||| || | | || || ||||||| ||| | ||||| | Sbjct 1007842 TTTCTTAACTGATGCTTTACCATGCAACTTAATCGGAATGAACTCCAAATTGATGTGTCA 1007901 Query 125729 GTACATAGAGTT-TGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACA 125787 ||||| || || ||| || ||||||||| || | ||| | | ||| |||| Sbjct 1007902 ATACATTGAATTCTGT-GCTGATCGTCTATTGGTGGCTTTGGGTAACGAAAAGGCATACA 1007960 Query 125788 ACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTT 125847 | || | || || || |||| ||| | ||| || || || ||||| ||||| | Sbjct 1007961 ATGCAACCAACCCATTCGATTGGATGGAGAACATCTCTTTAACCGGAAAGACTAACTTCT 1008020 Query 125848 TCGAGAAGAAGGT 125860 | ||||| ||||| Sbjct 1008021 TTGAGAAAAAGGT 1008033 Score = 100 bits (110), Expect = 4e-16 Identities = 293/446 (66%), Gaps = 4/446 (1%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 || || || || || | || || ||| | ||||| ||| | ||||| ||||| | || Sbjct 3100651 CAAGGAGGTAACAAGAGACCGGGTGCTTTTGCCGTTTACGTTGAACCATGGCATTCAGAT 3100592 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||| || | || | |||||||| || ||||| | || || | || Sbjct 3100591 GTGTTTGAATTCTTGGATTTACGCAAAAATCACGGAAAAGAAGAAGTTCGTGCACGTGAA 3100532 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || ||||| || ||| | ||||| |||||||||||||| || | | ||| | Sbjct 3100531 CTATTCTATGCTCTATGGATTCCAGACTTGTTCATGAAGCGTGTTGAACAAAATGGTGAA 3100472 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 ||| || | ||||||||| || || || ||| || | ||||| | || ||||| ||| Sbjct 3100471 TGGTGCTTGATGTGCCCCAACGAATCCCCTGGTTTGGCTGATTGTTACGGTGAAGAATTT 3100412 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGT-GAGACGAGTCGATGCACG 97174 || ||| | | ||||| | | ||| |||| || ||| || || | |||| Sbjct 3100411 GAAAAACTTTACGAGTCTTACGAAAAGCAAGGCAGATATGTAAAGAAGA-TCAAAGCACA 3100353 Query 97175 AGAACTGTGGAAGGCCA-TCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 | | ||||| | || | || ||| |||| || ||||| | || | ||| | | Sbjct 3100352 AAAGTTGTGGTATGCTATTCTTGA-ATCTCAAACTGAAACTGGTAACCCATTCATGTTGT 3100294 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 |||| ||| | | || | || || |||||| | ||||| ||||||||| ||| | Sbjct 3100293 ACAAAGATGCAGCAAACAGAAAAAGTAACCAAAAGAATTTGGGTACCATCAAGAACTCTA 3100234 Query 97294 ATCTGTGCACGGAAATTGTAGAGTAC 97319 | ||||||| |||||| | || ||| Sbjct 3100233 ACTTGTGCACAGAAATTATTGAATAC 3100208 >seq4 Length=1961900 Score = 86.0 bits (94), Expect = 9e-12 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 70058 AGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAG 70117 |||| || || ||||| || ||||| ||||| || || ||||| || | || | | Sbjct 1780591 AGACGAGCAGGTGATCTAGGACCAGTATACGGCTTTCAATGGAGACATTTTGGAGCAGAA 1780532 Query 70118 TATGTAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA-TCAT 70176 || | ||||| || ||| | || || |||||||||||||| ||| || | || Sbjct 1780531 TACAAAACGTGCGATGATGATTATACAGGACAAGGTGTTGATCAATTA-AGAGAAGTGAT 1780473 Query 70177 TGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGC 70236 ||| | | || | |||||||||||| | || || | || | |||||||||| || Sbjct 1780472 TGATAAAATTAAAAATAATCCAACAGATCGAAGAATAATTTTGAGTGCATGGAATCCGGC 1780413 Query 70237 AGATTTGCACCAA-ATGGCACTACCACCGTGTCA-CTGTTTGGCTCAGTTTT 70286 |||||| || || |||||| ||||||| ||||| ||||| | ||| |||| Sbjct 1780412 AGATTT-AACAAAGATGGCATTACCACCTTGTCATATGTTTTG-TCAATTTT 1780363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058662732080