Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1 138 8e-28 seq3 132 3e-26 >seq1 Length=6968282 Score = 138 bits (152), Expect = 8e-28 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || || | |||||| || ||||| ||||||||||| | | | | | | ||| Sbjct 5660997 AAGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAATCAGCCAAAGTACGCCCATCT 5661056 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || ||||| || ||||| | || |||||||||||||| |||||| ||||| ||||| Sbjct 5661057 TCCAATTGCTTACCAGCAAAGATTAAACGTTGTTGGTCTGGTGGAATACCTTCCTTGTCT 5661116 Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||| ||||| ||| ||| | || || |||||| | ||| || || | ||| || || Sbjct 5661117 TGAATCTTTGC-CTTAACATTGTCAATAGTATCGTTTGATTCAACCTCGAGGGTGATTGT 5661175 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||| || || |||||||||||||||||||| Sbjct 5661176 TTTACCCGTAAGGGTTTTTACAAAAATTTGCAT 5661208 Score = 125 bits (138), Expect = 5e-24 Identities = 159/216 (74%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCG--CG 15208 || || ||||| | |||||| |||||||| |||||||| || || ||| || || Sbjct 6898240 AATACCAAATGTAAGGTGGACTCTTTTTGGATGTTGTAGTCAGCC---AATGTGCGTCCG 6898184 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| ||||| || |||||| | || | |||||||||||| |||||| ||||||||| Sbjct 6898183 TCTTCCAATTGCTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTTG 6898124 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || || ||| || ||| | || || ||||| || |||| || |||| || || Sbjct 6898123 TCTTGGATCTTGGCTTTGACATTATCAATTGTATCACTGCTTTCGACTTCTAGTGTGATT 6898064 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| || || || || ||||| ||||||||| Sbjct 6898063 GTCTTACCAGTAAGTGTCTTGACAAAGATTTGCATA 6898028 Score = 116 bits (128), Expect = 3e-21 Identities = 157/216 (73%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCG--CG 15208 || || || || || || || ||||| || ||||||||||| || ||| || || Sbjct 6898012 AAGACCAAGTGGAGTGTAGATTCTTTCTGAATGTTGTAATCAGCC---AATGTGCGTCCG 6897956 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| |||||||| || || | ||||||||||||||||| ||| || ||||||||| Sbjct 6897955 TCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTG 6897896 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || || ||| || || | || || || ||||| |||| || |||| || || Sbjct 6897895 TCTTGGATCTTGGCTTTGACGTTRTCAATAGTGTCGCTGCTTTCGACTTCTAGTGTGATT 6897836 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || || || ||||||||||||||| Sbjct 6897835 GTCTTTCCTGTTAGTGTCTTGACAAAAATTTGCATA 6897800 Score = 114 bits (126), Expect = 9e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || || | ||| || || ||||| ||||||||||| | | | | ||||| Sbjct 6898468 AACACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAATCAGCCAAAGTACGGCCGTCT 6898409 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || |||||||| || || | ||||||||||||||||| || || ||||||||||| Sbjct 6898408 TCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGCGGGATACCTTCTTTGTCT 6898349 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| ||| || ||| | || || || ||| | ||| || || || || || || Sbjct 6898348 TGAATCTTGGCTTTGACATTGTCAATCGTGTCGGAAGATTCAACTTCCAATGTGATCGTC 6898289 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||||| ||||| ||||| ||||||||| Sbjct 6898288 TTTCCTGTCAATGTTTTGACAAAGATTTGCATA 6898256 Score = 100 bits (110), Expect = 2e-16 Identities = 157/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || ||||| ||||| || ||||| |||||||| || | | | | ||||| Sbjct 6897784 AACACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTGCGACCGTCT 6897725 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || ||||| || || || | ||||| | ||||||||| ||| || ||||||||||| Sbjct 6897724 TCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCTGGTGGGATACCTTCTTTGTCT 6897665 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| || ||| | || || ||||| ||| || || | |||||| || Sbjct 6897664 TGGATCTTGGCTTTGACATTGTCAATAGTATCAGAGGATTCAACCTCAAGGGTAATTGTC 6897605 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAA 15375 ||||| |||| || || ||||| |||||| || || |||||| Sbjct 6897604 TTACCAGTCAAGGTCTTGACAAAGATTTGC--ATCTGGAAATAA 6897563 Score = 87.8 bits (96), Expect = 1e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226 || || || ||||| ||||||||||| | | |||| | ||||| ||||| || ||| Sbjct 595522 GTAGATTCCTTTTGGATGTTGTAATCAGCCAAAGTTCTGCCATCTTCCAATTGCTTTCCA 595463 Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTT 15286 || | ||||||||||||||||| |||||||||||| ||||| || || ||| Sbjct 595462 GCAAAGATCAAACGTTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCCTTG 595403 Query 15287 ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || | || || || ||| || || || | ||| ||||| |||||||| Sbjct 595402 ACGTTGTCGATTGTGTCGGATGACTCCACCTCAAGGGTGATGGTCTTACCTGT 595350 >seq3 Length=3165745 Score = 132 bits (146), Expect = 3e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| | |||||| ||| |||||||| |||||||||||| | | | ||||| Sbjct 2529671 AAAACGAGATGAAGAGTGCTTTCTTTTTGAATGTTGTAATCGGCCAATGTACGTCCGTCT 2529612 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 ||||||||||| ||||| | ||||||||||||||||| |||||| |||||||| || Sbjct 2529611 TCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGTGGAATACCTTCTTTATCC 2529552 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| ||| || || | || || ||||| ||| || || |||||||| ||| Sbjct 2529551 TGAATCTTGGCTTTGACGTTATCGATTGTATCAGATGATTCCACCTCCAAGGTAATAGTT 2529492 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| || || ||||| ||||||||| Sbjct 2529491 TTTCCCGTCAATGTCTTGACAAAGATTTGCATA 2529459 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | ||||| ||||| | ||| || ||| || ||||| || ||||||||| Sbjct 2529458 CCACCACGTAATCTCAAAACGAGATGGAGTGTGCTTTCCTTTTGGATATTGTAATCGGCC 2529399 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | ||||| ||||| || ||||| | || | ||||||||| || |||| Sbjct 2529398 AATGTACGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGTTGATCTGGTGGA 2529339 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| ||| ||| ||| || | || |||||||| | ||| || Sbjct 2529338 ATACCTTCTTTGTCTTGAATCTTGGCCTTGACGTTGTCAATGGTATCCGAAGATTCAACC 2529279 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || || |||| |||||||||||| ||||||||| Sbjct 2529278 TCCAAAGTGATCGTCTTTCCGGTCAAAGTTTTTACAAAGATTTGCATA 2529231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362178943984578