Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1 140 2e-28 seq3 89.7 3e-13 >seq1 Length=6968282 Score = 140 bits (154), Expect = 2e-28 Identities = 163/219 (74%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||| ||||| || || || ||||| || |||||||||| |||| | | Sbjct 5660994 CGCAAGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAATCAGCCAAAGTACGCCCA 5661053 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||||||||| ||| ||| ||||||||||| ||||| | || || ||||| || Sbjct 5661054 TCTTCCAATTGCTTACCAGCAAAGATTAAACGTTGTTGGTCTGGTGGAATACCTTCCTTG 5661113 Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || |||| ||| || || | | ||| || ||||| | || ||| || || || Sbjct 5661114 TCTTGAATCTTTGCC---TTAACATTGTCAATAGTATCGTTTGATTCAACCTCGAGGGTG 5661170 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || ||||| |||||||| |||||||| |||||||||||| Sbjct 5661171 ATTGTTTTACCCGTAAGGGTTTTTACAAAAATTTGCATG 5661209 Score = 122 bits (134), Expect = 6e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| ||||| || || || ||||| || |||||||||| |||| | | | Sbjct 6898471 CGCAACACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAATCAGCCAAAGTACGGCCG 6898412 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||| || || ||| || |||||||| ||||| | || || |||||||| Sbjct 6898411 TCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGCGGGATACCTTCTTTG 6898352 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| ||| || | | |||||||||| | || ||| |||| || ||| Sbjct 6898351 TCTTGAATCTTGGCTTTGACATTGTCAATCGTGTCGGAAGATTCAACTTCCAATGTGATC 6898292 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || | ||||| || || |||||||| Sbjct 6898291 GTCTTTCCTGTCAATGTTTTGACAAAGATTTGCAT 6898257 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||| || | ||| || ||||| || || |||||||||| ||| || || | Sbjct 6898015 CGCAAGACCAAGTGGAGTGTAGATTCTTTCTGAATGTTGTAATCAGCCAATGTGCGTCCG 6897956 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||| || || ||| || |||||||| ||||| | || || |||||||| Sbjct 6897955 TCTTCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTG 6897896 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| ||| || | | ||| |||||| || || || || || || || Sbjct 6897895 TCTTGGATCTTGGCTTTGACGTTRTCAATAGTGTCGCTGCTTTCGACTTCTAGTGTGATT 6897836 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || || || || ||||||||||| Sbjct 6897835 GTCTTTCCTGTTAGTGTCTTGACAAAAATTTGCAT 6897801 Score = 104 bits (114), Expect = 1e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| |||||||| || || ||||||||||| || ||||| |||| ||| || || | Sbjct 6898243 CGCAATACCAAATGTAAGGTGGACTCTTTTTGGATGTTGTAGTCAGCCAATGTGCGTCCG 6898184 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||||||||| ||| || || | |||||| ||||| | || || |||||||| Sbjct 6898183 TCTTCCAATTGCTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTTG 6898124 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| ||| || | | ||| || || || || || || || || || Sbjct 6898123 TCTTGGATCTTGGCTTTGACATTATCAATTGTATCACTGCTTTCGACTTCTAGTGTGATT 6898064 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || ||||| || || || || |||||||| Sbjct 6898063 GTCTTACCAGTAAGTGTCTTGACAAAGATTTGCAT 6898029 Score = 91.5 bits (100), Expect = 9e-14 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| || | ||| ||||| ||||| || ||||| |||| |||| || | | Sbjct 6897787 CGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTGCGACCG 6897728 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||||||||| || ||| || || | ||| ||||| | || || |||||||| Sbjct 6897727 TCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCTGGTGGGATACCTTCTTTG 6897668 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| ||| || | | ||| || || || || ||| || || || || Sbjct 6897667 TCTTGGATCTTGGCTTTGACATTGTCAATAGTATCAGAGGATTCAACCTCAAGGGTAATT 6897608 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || | || || || || |||||||| Sbjct 6897607 GTCTTACCAGTCAAGGTCTTGACAAAGATTTGCAT 6897573 >seq3 Length=3165745 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| || | ||| | ||| || | ||| | ||| || ||||| ||||||||||| | Sbjct 2529459 ACCACCACGTAATCTCAAAACGAGATGGAGTGTGCTTTCCTTTTGGATATTGTAATCGGC 2529400 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| | | || ||||||||||| ||| ||| || | |||||| || || | || Sbjct 2529399 CAATGTACGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGTTGATCTGGTGG 2529340 Query 33262 TATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || |||||||| || |||| ||| || || | | ||| || || | || Sbjct 2529339 AATACCTTCTTTGTCTTGAATCTTGGCC---TTGACGTTGTCAATGGTATCCGAAGATTC 2529283 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| |||| ||| ||||| ||||| || | ||||||||| || |||||||| Sbjct 2529282 AACCTCCAAAGTGATCGTCTTTCCGGTCAAAGTTTTTACAAAGATTTGCAT 2529232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318777374664084