Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq3 125 5e-24 seq1 95.1 9e-15 >seq3 Length=3165745 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || || | ||| || ||||| ||||||||||| || |||||| ||| ||| | || Sbjct 2529671 AAAACGAGATGAAGAGTGCTTTCTTTTTGAATGTTGTAATCGGCCAATGTACGTCCGTCT 2529612 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || |||||||| || ||||| ||||| ||||| ||||| | || | |||||||||||| Sbjct 2529611 TCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGTGGAATACCTTCTTTATCC 2529552 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||| || |||||| || | | ||||| | | ||||| || | ||||| ||| Sbjct 2529551 TGAATCTTGGCTTTGACGTTATCGATTGTATCAGATGATTCCACCTCCAAGGTAATAGTT 2529492 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || || ||||| ||||| |||||||| Sbjct 2529491 TTTCCCGTCAATGTCTTGACAAAGATTTGCAT 2529460 >seq1 Length=6968282 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || ||||| || || || ||||| ||||| || ||||| ||| || | || Sbjct 6898012 AAGACCAAGTGGAGTGTAGATTCTTTCTGAATGTTGTAATCAGCCAATGTGCGTCCGTCT 6897953 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||||||||| |||||||| ||||| ||||| ||||| | || | ||||||||| ||| Sbjct 6897952 TCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCT 6897893 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCG-GCTCCACATCGACCGTAATTGT 44088 || || |||||| | ||| ||| || || | || || || | || ||||| Sbjct 6897892 TGGATCTTGGCTTTGACGTTRTCAATAGTGTC-GCTGCTTTCGACTTCTAGTGTGATTGT 6897834 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || |||| ||||| ||||| |||||||| Sbjct 6897833 CTTTCCTGTTAGTGTCTTGACAAAAATTTGCAT 6897801 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || ||||| || | ||| || ||||| || || ||||| || |||| |||| Sbjct 5660997 AAGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAATCAGCCAAAGTACGCCCATCT 5661056 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 |||||||| || || ||||| || || ||||| ||||| | || | |||||| || ||| Sbjct 5661057 TCCAATTGCTTACCAGCAAAGATTAAACGTTGTTGGTCTGGTGGAATACCTTCCTTGTCT 5661116 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||| ||| || || | ||| |||||| | || || |||| || |||||| Sbjct 5661117 TGAATCTTTGCCTTAACATTGTCAATAGTATCGTTTGATTCAACCTCGAGGGTGATTGTT 5661176 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||||| || | || || ||||| ||||||||| Sbjct 5661177 TTACCCGTAAGGGTTTTTACAAAAATTTGCATG 5661209 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 |||||||| || | || || ||||| || || ||||| || ||| | || Sbjct 6898468 AACACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAATCAGCCAAAGTACGGCCGTCT 6898409 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||||||||| |||||||| ||||| ||||| ||||| | || | ||||||||| ||| Sbjct 6898408 TCCAATTGTTTACCTGCAAAGATCAAACGTTGTTGGTCTGGCGGGATACCTTCTTTGTCT 6898349 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||| || |||||| | ||| || || | | || || || | || || || Sbjct 6898348 TGAATCTTGGCTTTGACATTGTCAATCGTGTCGGAAGATTCAACTTCCAATGTGATCGTC 6898289 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || || || || ||||| |||||||| Sbjct 6898288 TTTCCTGTCAATGTTTTGACAAAGATTTGCAT 6898257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354777349216584