Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq1 111 1e-19 seq3 104 2e-17 >seq1 Length=6968282 Score = 111 bits (122), Expect = 1e-19 Identities = 181/257 (70%), Gaps = 3/257 (1%) Strand=Plus/Minus Query 19953 TATAAAATTTAAATATATTTTATCATTTTCCTCCTCGTAACCTCAACACCAAATGTAGTG 20012 || |||| | ||| | |||| | | ||||| || || | | ||||||||| || | | Sbjct 6898511 TAAAAAAATGAAA-ACATTTAACTAGTTTCCACCACGAAGACGCAACACCAAGTGCAAGG 6898453 Query 20013 TAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCG 20072 ||||||| ||||| ||||||||||| ||| ||| |||||||||||||| || | Sbjct 6898452 TAGATTCCTTTTGGATGTTGTAATCAGCCAAAGTACGGCCGTCTTCCAATTGTTTACCTG 6898393 Query 20073 CATAAATAAGCCTCTGTTGATC-GACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 20131 || | || | | ||||| || | |||| | ||||||||||| ||| || ||| Sbjct 6898392 CAAAGATCAAACGTTGTTGGTCTGGCGGG-ATACCTTCTTTGTCTTGAATCTTGGCTTTG 6898334 Query 20132 ACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTT 20191 || | | ||| | ||| || ||| ||||| || || || || || ||||| ||| Sbjct 6898333 ACATTGTCAATCGTGTCGGAAGATTCAACTTCCAATGTGATCGTCTTTCCTGTCAATGTT 6898274 Query 20192 TTGACAAAAATTTGCAT 20208 |||||||| |||||||| Sbjct 6898273 TTGACAAAGATTTGCAT 6898257 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||||||||| || ||||| || || ||||| |||||||| || ||| ||| | || Sbjct 6897785 CAACACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTGCGACCGTC 6897726 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||||||||| || || ||| | || | || ||||| || || | ||||||||||| Sbjct 6897725 TTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCTGGTGGGATACCTTCTTTGTC 6897666 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 || || ||| || | | ||| || ||| | ||| || | |||||| || Sbjct 6897665 TTGGATCTTGGCTTTGACATTGTCAATAGTATCAGAGGATTCAACCTCAAGGGTAATTGT 6897606 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || ||||| || |||||||| |||||||| Sbjct 6897605 CTTACCAGTCAAGGTCTTGACAAAGATTTGCAT 6897573 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||| ||||| || | || ||||| ||||| ||||||||||| ||| ||| ||| Sbjct 5660996 CAAGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAATCAGCCAAAGTACGCCCATC 5661055 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||||||||| || || ||| | || | | ||||| || || | ||||| ||||| Sbjct 5661056 TTCCAATTGCTTACCAGCAAAGATTAAACGTTGTTGGTCTGGTGGAATACCTTCCTTGTC 5661115 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 ||| ||| || || | | ||| || |||| | ||| || | ||| || || Sbjct 5661116 TTGAATCTTTGCCTTAACATTGTCAATAGTATCGTTTGATTCAACCTCGAGGGTGATTGT 5661175 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| || || | ||||| |||||||||||||| Sbjct 5661176 TTTACCCGTAAGGGTTTTTACAAAAATTTGCAT 5661208 >seq3 Length=3165745 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || ||||| ||||| || | ||| ||||| ||| ||||| || ||||||||| || Sbjct 2529458 CCACCACGTAATCTCAAAACGAGATGGAGTGTGCTTTCCTTTTGGATATTGTAATCGGCC 2529399 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || | |||||||||||| || || ||| | ||||| | |||||||| || Sbjct 2529398 AATGTACGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGTTGATCTGGTGGA 2529339 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| ||| || || || | | ||| | ||| || ||| Sbjct 2529338 ATACCTTCTTTGTCTTGAATCTTGGCCTTGACGTTGTCAATGGTATCCGAAGATTCAACC 2529279 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| || || || || |||||||| ||||| ||||| |||||||| Sbjct 2529278 TCCAAAGTGATCGTCTTTCCGGTCAAAGTTTTTACAAAGATTTGCAT 2529232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419586903404298