Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2 172 5e-38 >seq2 Length=3834998 Score = 172 bits (190), Expect = 5e-38 Identities = 555/850 (65%), Gaps = 26/850 (3%) Strand=Plus/Minus Query 12861 TTTGA-TATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 ||||| |||||| ||| |||| ||||| ||||| || ||||| ||| || || || Sbjct 1008048 TTTGAGTATTCGGCAACCTTTTTCTCAAAGAAGTTAGTCTTTCCGGTTAAAGAGATGTTC 1007989 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATA-GTATTTTTTACACCCTAATTCTAGTAA 12978 ||||| ||||||| || || | | | || | |||| |||| || | | || Sbjct 1007988 TCCATCCAATCGAATGGGTTGGTTGCATTGTATGCCTTTTCGTTACCCAAAGCC-ACCAA 1007930 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 | | |||||| || || ||||| || ||| || | |||||||||| ||||| Sbjct 1007929 TAGACGATCAGCACAGAATTCAATGTATTGACACATCAATTTGGAGTTCATTCCGATTAA 1007870 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTC---GATAAC 13095 || || | ||| || ||||| || ||| ||| || || ||||| ||||| Sbjct 1007869 GTTGCATGGTAAAGCATCAGTTAAGAAACTTTGTTCGATTGAGACAGCTTCTGTGATAAT 1007810 Query 13096 TATGT-CTCT-TATTACGTTCTCTAATG-GAG-GATTTGATAGATGCTTAAACATCATAC 13151 ||| | || ||| | | ||| | | | || | ||| | |||| || || Sbjct 1007809 CTTGTTCACTGTATCAGG-------ATGAGCGCGCTTACGCAAATGGCTGAACAACAAAC 1007757 Query 13152 ATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGAC 13211 |||| |||||| ||| || ||||||||||| || || | || || || ||||| | || Sbjct 1007756 ATGCGAAATCAGTGTGTAAACCTTCATCTCTGCTGATCAATTCATTGGAGAATGTCAAAC 1007697 Query 13212 CCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTA 13271 | ||||| | || || || || | ||| || ||| || || ||||| || || | Sbjct 1007696 CGGGCATCAATCCACGCTTCTTGAGCCAGAAGATACTTGCGAATGAACCACTGAAGAAGA 1007637 Query 13272 TTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTA---CTATTTTTACTCT 13328 | |||||||| || ||||| || | ||| | |||| || | || | || | | Sbjct 1007636 TACCTTCAACGGCAGCAAAAGCGACCAAACGTTCAGCAAATGTGGCCCGCTTGTCAGAA- 1007578 Query 13329 CTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGT 13388 ||||||||| ||||| | ||| ||| ||| ||| || |||| || || | Sbjct 1007577 --ATCCACTTTAGTGCCCAATCTGCCTTTGTTTTGACGACTGGAATTGTTTCAATAGCAT 1007520 Query 13389 TAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACA 13448 || || | | || | | ||| || || ||||| ||||| || || Sbjct 1007519 CGAACAAGAACTCGCGTTGATCAGGGTCACGGATGTATGTATCAATCAACAAAGAGTAAG 1007460 Query 13449 TTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATA 13508 ||||||| ||||| ||||||||| |||||||||||||| || ||||| || |||| | Sbjct 1007459 TTTCTGAGTGAATGTTTTCCATCATGATTTGGAAACCATAGAAGCATCTTGCTTCTGCTG 1007400 Query 13509 CCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAG 13568 | |||||||| | |||| ||| | |||||||| || || || || ||| ||| | Sbjct 1007399 CTTGAACTTCTCCGCTGAATCGTTCGACCAAGTTTTCATTGACGATACCATCAGAAGCGG 1007340 Query 13569 CaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAAC---TTTAACC 13625 |||| || || | | ||| || || | |||||| || |||| || || Sbjct 1007339 CAAAGAATGCCAAAACGTGAGAGATGAAATGACGTTCGTTGTCGTTCAACTTGTTGTCCC 1007280 Query 13626 AATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCT 13685 |||| | |||||||| || ||||| | ||| || ||||||| |||||||| | || | Sbjct 1007279 AATCGTGCAAATCTTTGGACAAATCAATCTCTTCTGCGGTCCAGAAAGAAGCTTCTGCTT 1007220 Query 13686 TCTTATACAT 13695 | || ||||| Sbjct 1007219 TTTTGTACAT 1007210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430982095349316