Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1 149 1e-30 seq3 122 2e-22 seq2 122 2e-22 >seq1 Length=6968282 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| | |||||| || || ||||| || || || ||||||| | || | |||||||| Sbjct 6898238 TACCAAATGTAAGGTGGACTCTTTTTGGATGTTGTAGTCAGCCAATGTGCGTCCGTCTTC 6898179 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 | ||| || ||||| ||||| || | ||||| || || || || |||||||| || || Sbjct 6898178 CAATTGCTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTG 6898119 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||||| ||||| ||||| || | ||||| || ||| || |||||||| || ||||| Sbjct 6898118 GATCTTGGCTTTGACATTATCAATTGTATCACTGCTTTCGACTTCTAGTGTGATTGTCTT 6898059 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||||||| || ||||| || ||||| Sbjct 6898058 ACCAGTAAGTGTCTTGACAAAGATTTGCAT 6898029 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || ||||| || || || || || |||| | ||| | || ||||| | ||| Sbjct 5661006 TGCAAGGTGGATTCCTTTTGGATGTTGTAATCAGCCAAAGTACGCCCATCTTCCAATTGC 5661065 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| |||| | ||||| || || || || ||||| || || ||||||||| Sbjct 5661066 TTACCAGCAAAGATTAAACGTTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGAATCTTT 5661125 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || ||||| || | |||||| | | ||| ||||| || || || || ||||| ||| Sbjct 5661126 GCCTTAACATTGTCAATAGTATCGTTTGATTCAACCTCGAGGGTGATTGTTTTACCCGTA 5661185 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || ||||||||||| || ||||| Sbjct 5661186 AGGGTTTTTACAAAAATTTGCAT 5661208 Score = 132 bits (146), Expect = 1e-25 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 |||||||||||||||||| || || |||| | || | |||||||| | |||||| || Sbjct 6897998 TGTAGATTCTTTCTGAATGTTGTAATCAGCCAATGTGCGTCCGTCTTCCAATTGTTTACC 6897939 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 ||||| || | | ||||| || || || || |||||||| || || ||||| ||||| Sbjct 6897938 TGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTTGGCTTT 6897879 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || ||||| ||| || |||||||| || ||||| || || ||||| Sbjct 6897878 GACGTTRTCAATAGTGTCGCTGCTTTCGACTTCTAGTGTGATTGTCTTTCCTGTTAGTGT 6897819 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 6897818 CTTGACAAAAATTTGCAT 6897801 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 ||| || || || || || || ||||||| | ||| | ||||||||| | ||| || || Sbjct 6897770 TGTGGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTGCGACCGTCTTCCAATTGCTTACC 6897711 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 ||||| || | || ||||| || || || || |||||||| || || ||||| ||||| Sbjct 6897710 GGCAAAGATCAATCTTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTTGGCTTT 6897651 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | ||||| | ||| ||||| || ||||| ||||||||||| | || Sbjct 6897650 GACATTGTCAATAGTATCAGAGGATTCAACCTCAAGGGTAATTGTCTTACCAGTCAAGGT 6897591 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 6897590 CTTGACAAAGATTTGCAT 6897573 Score = 102 bits (112), Expect = 2e-16 Identities = 142/198 (72%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 104339 CTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTT 104398 |||| || ||| || | || || |||||||| || || || || || |||| | |||| Sbjct 595545 CTTA-CCGAAGGACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAATCAGCCAAAGTT 595487 Query 104399 CTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 || || ||||| | ||| ||||||||||| || | | ||||| || || || |||||| Sbjct 595486 CTGCCATCTTCCAATTGCTTTCCAGCAAAGATCAAACGTTGTTGGTCTGGTGGAATTCCT 595427 Query 104459 TCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGT 104518 || || || || ||||| || || || || || | || ||| | || ||||| || Sbjct 595426 TCCTTGTCTTGGATCTTAGCCTTGACGTTGTCGATTGTGTCGGATGACTCCACCTCAAGG 595367 Query 104519 GTAATAGTCTTACCAGTA 104536 || || |||||||| ||| Sbjct 595366 GTGATGGTCTTACCTGTA 595349 >seq3 Length=3165745 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 104368 TTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAA 104427 |||||| ||||| || || || | | || | |||||||||| |||||| |||||||| Sbjct 2529651 TTCTTTTTGAATGTTGTAATCGGCCAATGTACGTCCGTCTTCTAATTGTTTACCAGCAAA 2529592 Query 104428 AATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATT 104487 || | | ||||| || || || || |||||||||||||||||||| ||||| || || Sbjct 2529591 GATCAAACGTTGTTGGTCTGGTGGAATACCTTCTTTATCCTGAATCTTGGCTTTGACGTT 2529532 Query 104488 TTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547 || | ||||| | ||| ||||| | |||||||| || || || | ||| || || Sbjct 2529531 ATCGATTGTATCAGATGATTCCACCTCCAAGGTAATAGTTTTTCCCGTCAATGTCTTGAC 2529472 Query 104548 AAATATCTGCAT 104559 ||| || ||||| Sbjct 2529471 AAAGATTTGCAT 2529460 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | ||| ||| || || ||||| || || | | || | ||| ||||| Sbjct 2529440 ACGAGATGGAGTGTGCTTTCCTTTTGGATATTGTAATCGGCCAATGTACGACCATCTTCC 2529381 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | ||| || |||||||| || || | |||||||| || || || |||||||| || ||| Sbjct 2529380 AATTGCTTACCAGCAAAGATAAGACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGA 2529321 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || || || || || | |||||| || ||| ||||| | || || ||||| Sbjct 2529320 ATCTTGGCCTTGACGTTGTCAATGGTATCCGAAGATTCAACCTCCAAAGTGATCGTCTTT 2529261 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||||||||||| || ||||| Sbjct 2529260 CCGGTCAAAGTTTTTACAAAGATTTGCAT 2529232 >seq2 Length=3834998 Score = 122 bits (134), Expect = 2e-22 Identities = 540/833 (65%), Gaps = 33/833 (4%) Strand=Plus/Plus Query 268742 ATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGAC 268801 ||||||||| | || | |||||||| ||||| | |||||| | ||| |||| | || Sbjct 1007210 ATGTACAAAAAAGCAGAAGCTTCTTTCTGGACCGCAGAAGAGATTGATTTGTCCAAAGAT 1007269 Query 268802 TTAATAGATTGG---AAAAATTTAAAACCAGAAGAAAGAAGATTT-ATATCTTATATTCT 268857 || |||||| || || || || | | || || |||| || ||| | || | Sbjct 1007270 TTGCACGATTGGGACAACAAGTTGAA-CGACAACGAACGTCATTTCATCTCTCACGTTTT 1007328 Query 268858 TGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCA 268917 || || ||||| | | |||||||||||| || ||||| | || || ||| | Sbjct 1007329 GGCATTCTTTGCCGCTTCTGATGGTATCGTCAATGAAAACTTGGTCGAACGATTCAGCGG 1007388 Query 268918 AGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATAT 268977 ||| || || | ||||| ||||| || || || ||||| || || ||||| || Sbjct 1007389 AGAAGTTCAAGCAGCAGAAGCAAGATGCTTCTATGGTTTCCAAATCATGATGGAAAACAT 1007448 Query 268978 TCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGA--AAAG 269035 ||| ||||| | ||| | | || || ||||| || || ||| | || || | Sbjct 1007449 TCACTCAGAAACTTACTCTTTGTTGATTGATACATACATCCGTGA---CCCTGATCAACG 1007505 Query 269036 AAAAGACTATTTTC--TTCTATGAGAACTATGGACTGT-GTGAGaaaaaaaTCTGAATGG 269092 | || | ||| | |||| ||| || | || || | || ||| | || ||| Sbjct 1007506 CGAGTTCT-TGTTCGATGCTATTGAAACAATTC-CAGTCGTCAAAACAAAGGCAGATTGG 1007563 Query 269093 GCTCTGAAATGGATAAACGATA-GCGCGCCTTAC--GGAGAAAGGTTAGTTGCTTTTGCC 269149 || || || ||||| || | ||| ||| | | ||| | || || |||||||| Sbjct 1007564 GCACTAAAGTGGATTTCTGACAAGCGGGCCACATTTGCTGAACGTTTGGTCGCTTTTGCT 1007623 Query 269150 GCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGA 269209 || || |||||||| ||||| || || || || |||||| ||| | ||||| | Sbjct 1007624 GCCGTTGAAGGTATCTTCTTCAGTGGTTCATTCGCAAGTATCTTCTGGCTCAAGAAGCGT 1007683 Query 269210 GGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACAC 269269 || | ||||| || || || ||||| || |||||||| ||||| || |||||||||||| Sbjct 1007684 GGATTGATGCCCGGTTTGACATTCTCCAATGAATTGATCAGCAGAGATGAAGGTTTACAC 1007743 Query 269270 TGCGACTTCGCTTGTTTATTATTTACTAATTATCTTTCACACAAACCTTCTCAAGATAGA 269329 || ||||| ||||| || || | ||| | | | | || || |||| | Sbjct 1007744 ACTGATTTCGCATGTTTGTTGTTCAGCCATTTGCGTAAGCGC---GCTCATCCTGATACA 1007800 Query 269330 GTATACGAAATTAT---AGATTCAGCTGTTTCTGTAGAAACAGAATTTC-TAACGGAAGC 269385 || || | ||||| ||| |||||| || | | |||| | |||| |||| || || Sbjct 1007801 GTGAACAAGATTATCACAGA---AGCTGTCTCAATCG-AACAAAGTTTCTTAACTGATGC 1007856 Query 269386 TCTATCTATCGATCTT-ATCGGTATGAATAGCAAATCGATGATAGAATATATTAAGTTCG 269444 | || | || | ||| ||||| ||||| ||||| |||| |||| ||| | ||| Sbjct 1007857 TTTA-CCATGCAACTTAATCGGAATGAACTCCAAATTGATGTGTCAATACATTGAATTCT 1007915 Query 269445 TATCTGATAGATTGCTGGTGTCTTTAGGGTTTAGTAAA-AAATATAACGTTGAAAATCCG 269503 ||||| | | ||||| |||| |||| | ||| ||| || | || || Sbjct 1007916 GTGCTGATCGTCTATTGGTGGCTTT-GGGTAACGAAAAGGCATACAATGCAACCAACCCA 1007974 Query 269504 TTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGAGAA 269556 || || |||||||| || || ||| || ||| |||| ||||| ||||| Sbjct 1007975 TTCGATTGGATGGAGAACATCTCTTTAACCGGAAAGACTAACTTCTTTGAGAA 1008027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397544367064