Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq3 113 5e-20 seq4 102 1e-16 >seq3 Length=3165745 Score = 113 bits (124), Expect = 5e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 19367 GGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAA 19426 |||||||| ||||||||| | | ||||||||| ||| |||||| | |||||||||| Sbjct 2163634 GGTGATAAATTTGCTTCTCGTCACGGTCAAAAAGGTACAATTGGTATCACTTATCGTCAA 2163693 Query 19427 GAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATTAACCCACATGCT 19486 ||||||||||| ||| ||| | | || | ||| ||| || | |||||||| || || Sbjct 2163694 GAAGATATGCCATTTTCTACACAAGGAGTTACGCCCGATATTGTCATTAACCCTCACGCA 2163753 Query 19487 TTTCCAAGTCGAATGAC 19503 |||||||||||||||| Sbjct 2163754 ATTCCAAGTCGAATGAC 2163770 >seq4 Length=1961900 Score = 102 bits (112), Expect = 1e-16 Identities = 365/563 (65%), Gaps = 32/563 (6%) Strand=Plus/Plus Query 6699 TGGATGAGGATTATAATCTAACAATTCAAAATCTTCAAATTTAAAATCACATAAATTATC 6758 ||||| ||| ||||| || | ||||||||||||| |||| |||||| | || || Sbjct 1780028 TGGATAAGGTTTATAGCCTTGTACTTCAAAATCTTCATATTTGAAATCATCAATATCTTC 1780087 Query 6759 AGACtttttttttAATATTACAACAGGTGAA-GGTTTTATTGATCGAGTTAATTGTTCTT 6817 | |||| ||| | | | || ||| ||| || | || | |||||||||| Sbjct 1780088 A-ACTTCACGTTTCCAAATCAATTTGGGGAACGGTCTTGGTTCACGTTTCAATTGTTCTT 1780146 Query 6818 TTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTCAC 6877 | | || || | ||||||| ||||| ||| |||||||| | | || ||||||| Sbjct 1780147 TGAGAGGTTCAACATGATCTCTATAAACATGTGCATCTCCCATTGCTAAAACCAATTCAC 1780206 Query 6878 CTGGTTTCATATCAA--CAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTAC 6935 || || || ||| || ||| || || | || ||| | ||| |||||| || | Sbjct 1780207 GTGCTT-CACATCCTGTCACTTTG-GCGATCATATGTGTAAGTAAAGCATAACTTGCGAT 1780264 Query 6936 ATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGATAA--- 6992 ||| || || || ||||| || | ||| || | |||||| |||||| || | Sbjct 1780265 ATTGAATGGGACTCCTAAACCTAAATCACAAGAACGTTGATACATTTGACATGAAAGTTC 1780324 Query 6993 -----------AAT----ATTGTC---TATAGCAT---AAAATTGACACAATACATGACA 7031 || | | || || || | |||||||||| || | |||||| Sbjct 1780325 TTTTTTACCTGAAGGCGAACTTTCAGGTAAAGAAACGAAAAATTGACAAAACATATGACA 1780384 Query 7032 TGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCT 7091 || ||||| | || || ||| | |||||||| ||| ||| | || | || Sbjct 1780385 AGGTGGTAATGCCATCTTTGTTAAATCTGCCGGATTCCATGCACTCAAAATTATTCTTCG 1780444 Query 7092 ATCATTTGGATTTGTTTTTAATTTTGTTA-TAATTATTTGTAATTGATCTATACCCTGAC 7150 ||| ||||||| ||||||||||| | | | | | | ||||||||| | ||| || | Sbjct 1780445 ATCTGTTGGATTA-TTTTTAATTTTATCAATCACTTCTCTTAATTGATCAACACCTTGTC 1780503 Query 7151 CTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCAT 7210 || ||||| | || || || | || | ||||||||||||||||||||||| || | Sbjct 1780504 CTGTATAATCATCATCGCACGTTTTGTATTCTGCTCCAAAATGTCTCCATTGAAAGCCGT 1780563 Query 7211 AAATAGGACCTAAATCACCTTCT 7233 | | || |||| ||||||| || Sbjct 1780564 ATACTGGTCCTAGATCACCTGCT 1780586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595871567992800