Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3 132 8e-27 seq2 132 8e-27 >seq3 Length=3165745 Score = 132 bits (146), Expect = 8e-27 Identities = 190/268 (71%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || ||||| || | | | | || |||||||| ||||| || || |||||||||||| Sbjct 1969737 GCCAAACGTCACCGTAAAATTTTGCGTGATAACATTCAAGGTATTACAAAGCCAGCTATC 1969796 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| |||||||||||||||| || || ||| | || || ||| | || || || | Sbjct 1969797 CGTCGTTTGGCTCGTCGTGGTGGTGTGAAACGTATTTCAGGTTTGATTTACGATGAAACA 1969856 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||| | || |||| | | |||| || | |||| | || || || || Sbjct 1969857 CGTGGTGTTCTAAAACTCTTTTTGGAATCCGTCATTCGTGATTCAGTCACTTACACTGAA 1969916 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||||| || ||||| ||||| || | || |||| || || | ||||||||||| Sbjct 1969917 CATGCTAAGCGCAAGACAGTCACTTCTCTTGACGTCGTTTACGCCCTCAAACGTCAAGGT 1969976 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || | | || ||||| || ||||| Sbjct 1969977 CGCACTTTGTACGGTTTCGGTGCTTAAT 1970004 >seq2 Length=3834998 Score = 132 bits (146), Expect = 8e-27 Identities = 180/247 (73%), Gaps = 3/247 (1%) Strand=Plus/Minus Query 16447 CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCG 16506 ||||| | | || || ||||||||||| || || |||||||| ||||||||| ||||||| Sbjct 898404 CAGATTT-TGCGTGACAACATCCAAGGTATTACAAAGCCAGCAATCCGTCGTTTGGCTCG 898346 Query 16507 TCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAA 16566 ||||||||| || |||||| | || || ||| |||| || || | |||| ||| | || Sbjct 898345 TCGTGGTGGTGTTAAGCGTATTTCAGGTTTGATCTACGACGAAACCCGTGGTGTCCTCAA 898286 Query 16567 GATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTA 16625 | ||| | | ||||||| | ||| | || || || || || || || || || | Sbjct 898285 ATTGTTCTTGGAATCCGTTATTCGTGACTCAGTTACA-TACACTGAACATGCCAAGCGCA 898227 Query 16626 AGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATG 16685 ||||||| || || | ||| |||| || || | |||||||||||||| | | || | Sbjct 898226 AGACTGTTACATCTCTTGATGTCGTTTACGCTCTCAAACGTCAAGGCCGCACTTTGTACG 898167 Query 16686 GTTTTGG 16692 |||| || Sbjct 898166 GTTTCGG 898160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075146970194