Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2 172 6e-38 >seq2 Length=3834998 Score = 172 bits (190), Expect = 6e-38 Identities = 462/707 (65%), Gaps = 9/707 (1%) Strand=Plus/Minus Query 21320 AATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAGCT 21379 ||||| || ||||||||||| |||| | ||||| ||||| || || || | ||| Sbjct 1007913 AATTCAATGTATTGACACATCAATTTGGAGTTCATTCCGATTAAGTTGCATGGTAAAGCA 1007854 Query 21380 TTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTATTATCCTAGAT 21439 | || || ||| || ||| || ||||| ||||| || || || | | || Sbjct 1007853 TCAGTTAAGAAACTTTGTTCGATTGAGACAGCTTCTGTGATAATCTTGTTCACTGTATCA 1007794 Query 21440 GTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAATCACAATGCAAACCT 21499 | | || | | | || || | |||| ||||||||| |||||| || |||||| Sbjct 1007793 GGATGAGCGCGCTTACGCAAATGGCTGAACAACAAACATGCGAAATCAGTGTGTAAACCT 1007734 Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559 ||||| || || || |||||||| || ||||| ||||||||||| ||||| | ||| || Sbjct 1007733 TCATCTCTGCTGATCAATTCATTGGAGAATGTCAAACCGGGCATCAATCCACGCTTCTTG 1007674 Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619 | ||| || || || |||| || ||||| || || |||||||||||||| || Sbjct 1007673 AGCCAGAAGATACTTGCGAATGAACCACTGAAGAAGATACCTTCAACGGCAGCAAAAGCG 1007614 Query 21620 ACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCC 21679 || || |||||| | |||| | || || | ||||| ||| |||||| | |||| Sbjct 1007613 ACCAAACGTTCAGCAAATGTGGCCCGCTTGTCAGAAATCCACTTTAGTGCCCAATCTGCC 1007554 Query 21680 TTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAA-AAGA--TGAtttttttCATCT 21736 ||| ||| | |||||| |||||||| | || |||| | || ||| Sbjct 1007553 TTTGTTTTGACGACTGGAATTGTTTCAATAGCATCGAACAAGAACTCGCGTTGATCAGGG 1007494 Query 21737 ACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATC 21796 || ||| ||| | || |||| || || || ||||| ||| Sbjct 1007493 TCA-CGG--ATGTATGTATCAATCAACAAAGAGTAAGTTTCTGAGTGAATGTTTTCCATC 1007437 Query 21797 GCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTCGGAATAAAATCGT 21856 || || || || || || |||||||| |||| |||||| || |||||| Sbjct 1007436 ATGATTTGGAAACCATAGAAGCATCTTGCTTCTGCTGCTTGAACTTCTCCGCTGAATCGT 1007377 Query 21857 TGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTT 21916 | ||||||||||||| || || |||||| |||||||| |||||||| | | Sbjct 1007376 TCGACCAAGTTTTCATTGACGATACCATCAGAAGCGGCAAAGAATGCCAAAACGTGAGAG 1007317 Query 21917 ATAAAATATCGTTCGTTATCTGTTAATTTTTT---CCAATCTAATAAATCTTTTGATAAA 21973 || |||| |||||||| || | || || || |||||| |||||||| || ||| Sbjct 1007316 ATGAAATGACGTTCGTTGTCGTTCAACTTGTTGTCCCAATCGTGCAAATCTTTGGACAAA 1007257 Query 21974 TCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATACAT 22020 || | ||||| | ||||| || ||| || ||||| ||||| Sbjct 1007256 TCAATCTCTTCTGCGGTCCAGAAAGAAGCTTCTGCTTTTTTGTACAT 1007210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531900414371920