Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2 324 2e-83 >seq2 Length=3834998 Score = 324 bits (358), Expect = 2e-83 Identities = 1399/2179 (64%), Gaps = 61/2179 (3%) Strand=Plus/Plus Query 61995 GTGAATTGAATGGGAGCGGATGCG---GGTTTCGTACGTAGATAGTACATTCCCGTTTTT 62051 ||||||||||| |||| |||| ||| | ||||||| || || ||||||| ||| Sbjct 3099258 GTGAATTGAAT---AGCGTTTGCGGCAGGTCTTGTACGTAAGTAATAAGTTCCCGTCTTT 3099314 Query 62052 AGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGC- 62110 | || |||||||||| || |||||||| || | || || || | | | ||| Sbjct 3099315 AATCCTTTCTTCCATCCGTAGAAGTGCATACTTGTCAATT--GACCAAAT-GTAGGTGCG 3099371 Query 62111 --TATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 62168 || |||||| |||| | ||||||||| ||||| ||||| | || || ||||| Sbjct 3099372 CTTAAATGGATGTTCAAACTTTGACTTTGGCAAATGAATGCTCCACGATCGGCTGCCATA 3099431 Query 62169 TTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCT 62228 | ||||| | ||||| |||||||||| || || || | || || ||||| ||| Sbjct 3099432 TCAATGATTGCTTTTTGACTGATTTCCCAAACGGTCTTGTACAATCTTTTGATATCATCT 3099491 Query 62229 GGAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCA 62285 |||| || | || ||||| |||||||||| || || || || ||||| || Sbjct 3099492 GGAATTCCTGGAACGTTTTGAATTGATCCACCATGAGCAATGATTCTGTTCTTCATTGTT 3099551 Query 62286 TCATTCCATAATTTTCTCTCGGTTAAAACTC-TAAGGA-GATGCGGATTAACTACTTGAA 62343 || ||||| | | || || | ||| | || || ||||| ||||| | Sbjct 3099552 TCTGACCATAGTCCTTGTTCCACCAATGTACGTAATAACCAT--GGGTTAACAACTTGGA 3099609 Query 62344 ATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCAT 62403 ||||||| | || || | || ||||| || || ||| | ||||| | | |||| Sbjct 3099610 ATTCTCCTGCTAACACACGCCTTGTGTAGATGTTTGAGGTGAAAGGTTCAAAGCATTCAT 3099669 Query 62404 TATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTC 62463 | ||| ||||||||| || || ||||| ||||| ||||||| ||||| ||| | Sbjct 3099670 TGAATCCTAAAATTTGACTGGTAGAAGCAGTAGGCATGGGTGCCAACAATAGCGAATTAC 3099729 Query 62464 TAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTC---CCAATTCCAAAGATCCGA 62518 | |||| || |||| || || ||||||| |||| ||| ||||| ||||| || Sbjct 3099730 GTAAACCG--TGCTCTGCAATCTTTTCTTTTA---GTTCAGACCAGTTCCATAGATCGGA 3099784 Query 62519 CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATA 62578 ||| || ||||| || ||||| || ||||| | || Sbjct 3099785 TGGTGTTACGTTCCACATGTCATATTGTAATTCTCCCTTACTTGCAGGGGATCCCTCGTA 3099844 Query 62579 TGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATA 62638 ||| || |||| |||| | | ||| | ||| ||||| ||| || ||| | | || Sbjct 3099845 TGTTTCATATGTTCCTAATTCTTTAGCCAATTCGCAACTTCTCTCCAAAGCAGCATGGTA 3099904 Query 62639 AATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATT 62698 || ||||| ||||| | || | | ||||||| | ||| || || | Sbjct 3099905 GATCGTTTCAAAGATTTGAACGTTCAATTTGCGTGCTTCGGGTGAATCGAAGGGCATACC 3099964 Query 62699 TAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 62758 |||| || || || || || | || | || || ||||||||||| | || | | | Sbjct 3099965 CAAGATCATGAATGCATCTGCAAGACCGTTGACTCCGATACCGATAGGACGGTGACGCAT 3100024 Query 62759 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62818 ||||| | |||||| | || |||||||| ||||| |||||||| || | | | Sbjct 3100025 GTTAGATCTGCGTGCTTCTTCGACTGGGTAATAATTGATATCAATAATTTTGTTCA-AGT 3100083 Query 62819 TCTGACA-ATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATTA 62877 | ||| || |||||| | || | | | || |||||| | | | | || Sbjct 3100084 TACCACAGATCACTTTGGCAACTGCGTGTAACTTCTTGAAATCATAAGTC---TTTGTTG 3100140 Query 62878 CA-----AAC--ATGTT--CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAG 62928 || ||| | ||| ||| |||| || |||| ||| || ||||| || |||| || Sbjct 3100141 CAGGGTCAACGTAGGTTGGCAAAGCAATCGAAGCCAAATTGCACACGGCAACTTCATCAG 3100200 Query 62929 CATCCGCA-TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTT 62987 | | || |||| || || || ||||| | ||| |||||| || || ||||| Sbjct 3100201 -GTGCACAGTATTCAATAATTTCTGTGCACAAGTTAGAGTTCTTGATGGTACCCAAATTC 3100259 Query 62988 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 63047 | ||| ||||| ||| |||| ||||| || || | |||||||| ||||||||||| Sbjct 3100260 TTTTGGTTACTTTTTCTGTTTGCTGCATCTTTGTACAACATGAATGGGTTACCAGTTTCA 3100319 Query 63048 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCT- 63106 | |||||||| | ||| || | ||| | | | || || || | | ||||| Sbjct 3100320 GTTTGAGATTCAAGAATAGCATACCACAACTTTTGTGCTTTGATCTTCTTTACATATCTG 3100379 Query 63107 CCTTTCTCTTTCGTATAGTGT-ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCA 63165 |||| || ||||||| || | || | | ||| || || || || || || ||| Sbjct 3100380 CCTTGCT-TTTCGTA-AGACTCGTAAAGTTTTTCAAATTCTTCACCGTAACAATCAGCCA 3100437 Query 63166 ATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 63225 | ||||| |||| | || |||||||| |||| || || | | | || || |||| Sbjct 3100438 AACCAGGGGATTCGTTGGGGCACATCAAGCACCATTCACCATTTTGTTCAACACGCTTCA 3100497 Query 63226 TAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTT 63284 | || | || |||||||| ||||| ||| ||||| || | | | | ||| || ||| Sbjct 3100498 TGAACAAGTCTGGAATCCATAGAGC-ATAGAATAGTTCACGTGCACGAACTTCTTCTTTT 3100556 Query 63285 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63344 || ||| || | ||| | ||| | | | ||| |||||||| ||||| | ||| Sbjct 3100557 CCGTGATTTTTGCGTAAATCCAAGAATTCAAACACATCTGAATGCCATGGTTCAACGTAA 3100616 Query 63345 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63404 | ||| | | | || || | ||||| ||||| ||||| | || | ||| || | ||| Sbjct 3100617 ACGGCAAAAGCACCCGGTCTCTTGTTACCTCCTTGATCAACATAACGAGCAGTTGTGTTA 3100676 Query 63405 TAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTT 63464 | || | |||||| || | |||||||| | | || || ||||| | || || | Sbjct 3100677 AATACACGCAACATAGGTACGATACCGTTACTTGTTCCGTTTGTACCTGCAATGTATGAT 3100736 Query 63465 CCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63524 || | | ||||| || ||| || || || || ||||| | || || || | | Sbjct 3100737 CCTGTTCCGCGAATGTTGTGAATGTTTAATCCGATACCACCTGCACTCTTGGAAATCATT 3100796 Query 63525 GCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGA 63584 || || ||| | || ||||| ||||| || ||| |||||| ||||| || | Sbjct 3100797 GCACAAATTTTGAGTGTATCATAAATACCATCAATGGAATCATCTTTCATGGAAACCAAG 3100856 Query 63585 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 63644 || || |||||||| | | ||| || ||||| || | ||| || || || || Sbjct 3100857 AAGCATGAGGACATTTGTGGTCTTGGAGTACCAGCATTGAAAAGGGTTGGTGATGCATGT 3100916 Query 63645 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGA 63704 ||||| | |||||| | || ||||| || ||||| || | || | ||| | Sbjct 3100917 GTAAAGTACTTTTCACTCAAAAGGTTGTATGTTTCAATTGCAGCATCAACATCTTCTCCG 3100976 Query 63705 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTT 63764 ||||| || || || |||||||| ||||| || || ||||||||| | | || || Sbjct 3100977 TGAATACCAACGGCAACACGCATCAACATATGTTGTGGTCTTTCAGCAACTTTTCCATTG 3101036 Query 63765 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 63823 || ||| | ||| ||| ||| | || || |||||||| |||| || || ||| || Sbjct 3101037 ATACGCAAAAGGTATGATCGTTCTAGGGTCTTGAAACCAAAGAAGTTATAGTGGAAA-TC 3101095 Query 63824 TCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACT-ATATCCATGG 63882 || || ||||| || | |||| | || | | || || | | | | ||| Sbjct 3101096 ACGATCATAAATGATTGCAGAGTCTAATTGTGCTTGATTCTTCATGATTGCGTTGTATGT 3101155 Query 63883 TGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAAT 63942 || | | ||| || || || || || ||||| |||||||| || | | | |||| Sbjct 3101156 TGTTTC-TGAGATCATTGGGCTGTGCTTTCCATTGCGTGGATTAACGTATTCGTACAAAT 3101214 Query 63943 CCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATT--TGATACGGCTAT 64000 | | || |||| ||| || || ||| || ||||| | ||| ||||| || || Sbjct 3101215 CTTTGATGACTTGACTGAACGTCTTACGTGTCTCTTTGTGCAAATTGCTGATA--GCAAT 3101272 Query 64001 TCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGG 64059 | || || | | |||||||| || || ||| || | || || || |||||| Sbjct 3101273 ACGTGCTGCCAAGACAGCATAATCGGGGTGGGTTGTTGT-CTTGTATGCAGCAGTTTCGG 3101331 Query 64060 CTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCA 64119 | |||| |||| | ||| |||||||| || |||| || || || | ||| || || Sbjct 3101332 CAGCCAAGTTGTCAAGTTCAACCGTTGTCACACCATCGTAAATACCATCAATGACTTTTC 3101391 Query 64120 TAGCTATTTTAATAGGATC 64138 | | |||| |||||| || Sbjct 3101392 TGGTAATTTCAATAGGGTC 3101410 Score = 203 bits (224), Expect = 4e-47 Identities = 573/867 (66%), Gaps = 26/867 (3%) Strand=Plus/Minus Query 33004 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 33063 || ||||| ||| |||||| | || ||| || || || ||||| ||||| || Sbjct 1008057 ACGCCCATCTTTGAGTATTCGGCAACCTTTTTCTCAAAGAAGTTAGTCTTTCCGGTTAAA 1007998 Query 33064 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 33123 || || || ||||| |||| || || ||||| |||| || |||| ||||| Sbjct 1007997 GAGATGTTCTCCATCCAATCGAATGGGTTGGTTGCATTGTATGCCTTTTCGTTACCCAA- 1007939 Query 33124 TCAGAAATCAAT---CTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTC 33180 || | |||| | ||| || |||||| || ||| ||||| || | ||| Sbjct 1007938 --AGCCACCAATAGACGATCAGCACAGAATTCAATGTATTGACACATCAATTTGGAGTTC 1007881 Query 33181 ATTCCTAT-AAGTTTAACTGGAAGAGCCGCAGT-AAGAAATTCTTGTTCAATGGATACCG 33238 ||||| || ||||| | ||| | ||| |||| |||||| | |||||| || || || | Sbjct 1007880 ATTCCGATTAAGTTGCA-TGGTAAAGCATCAGTTAAGAAACT-TTGTTCGATTGAGACAG 1007823 Query 33239 CATCTGTTATAATAGATCTAACGGTTTCTTCA----CTCGGTGGATGCAATAAATGTTTA 33294 | ||||| ||||| | || || || | | || | | |||| ||| | Sbjct 1007822 CTTCTGTGATAATCTTGTTCACTGTATCAGGATGAGCGCGCTT-ACGCAA---ATGGCTG 1007767 Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 |||| ||||||||||||||| ||| | ||| || ||||| || || | ||| ||||| Sbjct 1007766 AACAACAAACATGCGAAATCAGTGTGTAAACCTTCATCTCTGCTGATCAATTCATTGGAG 1007707 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || || | |||||||| | |||||||| || ||||| || || |||||||| ||| Sbjct 1007706 AATGTCAAACCGGGCATCAATCCACGCTTCTTGAGCCAGAAGATACTTGCGAATGAACCA 1007647 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC-- 33472 |||||||| ||||| || |||||||| || | | | || || | ||| | Sbjct 1007646 CTGAAGAAGATACCTTCAACGGCAGCAAAAGCGACCAAACGTTCAGCAAATGTGGCCCGC 1007587 Query 33473 -TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33531 ||||| ||||||||| | |||||||| ||||| |||| || || || ||||| Sbjct 1007586 TTGTCAGAAATCCACTTTAGTGCCCAATCTGCCTTTGTTTTGACGACTGGAATTGTTTCA 1007527 Query 33532 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33591 || |||| || | | | || || | || | || ||||| ||||| | | Sbjct 1007526 ATAGCATCGAACAAGAACTCGCGTTGATCAGGGTCACGGATGTATGTATCAATCAACAAA 1007467 Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33651 || |||| || ||||||||||| || || || || || ||||| ||||| || Sbjct 1007466 GAGTAAGTTTCTGAGTGAATGTTTTCCATCATGATTTGGAAACCATAGAAGCATCTTGCT 1007407 Query 33652 TCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCA 33711 || | || |||||| | |||||||| |||| |||||||| || || || ||| Sbjct 1007406 TCTGCTGCTTGAACTTCTCCGCTGAATCGTTCGACCAAGTTTTCATTGACGATACCATCA 1007347 Query 33712 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT--AGT- 33768 || ||||| || ||||| || || || |||| ||||| || ||| | | Sbjct 1007346 GAAGCGGCAAAGAATGCCAAAACGTGAGAGATGAAATGACGTTCGT-TGTCGTTCAACTT 1007288 Query 33769 -TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 33827 || | |||||| | | |||||| || | ||| | ||||| | ||||| || || || Sbjct 1007287 GTTGTCCCAATCGTGCAAATCTTTGGACAAATCAATCTCTTCTGCGGTCCAGAAAGAAGC 1007228 Query 33828 CTCTGCCTTTTTATACATGTTCCAGAT 33854 ||||| ||||| ||||| | ||| || Sbjct 1007227 TTCTGCTTTTTTGTACATTTGCCAAAT 1007201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946748363280