Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 1e-15 seq3 87.8 2e-12 >seq1 Length=6968282 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| |||||||| || ||||| ||||||| | ||| | ||||| | Sbjct 6898257 ATGCAAATCTTTGTCAAAACATTGACAGGAAAGACGATCACATTGGAAGTTGAATCTTCC 6898316 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | |||||| |||||| ||||||||||| || || || || ||| Sbjct 6898317 GACACGATTGACAATGTCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCGCCAGACCAA 6898376 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 ||| | | || | | || |||||| | ||||| | | || | || || || || Sbjct 6898377 CAACGTTTGATCTTTGCAGGTAAACAATTGGAAGACGGCCG-TACTTTGGCTGATTACAA 6898435 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAA 26998 ||| ||||| |||||||| | || |||| || | ||| | || ||||| Sbjct 6898436 CATCCAAAAGGAATCTACCTTGCACTTGGTGTTGCGTCTTCGTGGTGGAAA 6898486 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||||||||| | || || ||| | |||||| |||| | ||||||||| Sbjct 5661208 ATGCAAATTTTTGTAAAAACCCTTACGGGTAAAACAATCACCCTCGAGGTTGAATCAAAC 5661149 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | || || ||||||| ||||| ||||| || || || || ||| Sbjct 5661148 GATACTATTGACAATGTTAAGGCAAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAA 5661089 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 ||| | | || | | || || ||| | ||||||| | || | || || || || Sbjct 5661088 CAACGTTTAATCTTTGCTGGTAAGCAATTGGAAGATGGGCG-TACTTTGGCTGATTACAA 5661030 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 ||| ||||| ||||| || | || ||||| || Sbjct 5661029 CATCCAAAAGGAATCCACCTTGCACTTGGTCTTG 5660996 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || ||| |||| ||||| | ||||| | ||| | ||| | | Sbjct 6897801 ATGCAAATTTTTGTCAAGACACTAACAGGAAAGACAATCACACTAGAAGTCGAAAGCAGC 6897860 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | |||||| ||||| ||||||||||| || || || || ||| Sbjct 6897861 GACACTATTGAYAACGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 6897920 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 ||| | | || | | || |||||| | ||||| | | || | || || || || Sbjct 6897921 CAACGTTTGATCTTTGCAGGTAAACAATTGGAAGACG-GACGCACATTGGCTGATTACAA 6897979 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||||| ||||||||||| |||| ||||| || Sbjct 6897980 CATTCAGAAAGAATCTACACTCCACTTGGTCTTG 6898013 >seq3 Length=3165745 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||||||||| || || ||||| ||||||| | || | ||||| Sbjct 2529232 ATGCAAATCTTTGTAAAAACTTTGACCGGAAAGACGATCACTTTGGAGGTTGAATCTTCG 2529291 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| || | ||||| |||||| ||||||||||| || || || |||||| Sbjct 2529292 GATACCATTGACAACGTCAAGGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAA 2529351 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | || || | | || || ||| | ||||||| | | | | ||| || || Sbjct 2529352 CAACGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGTACATTGGCCGATTACAAT 2529411 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGA 26984 || ||||| ||| || ||||||| || ||||| Sbjct 2529412 ATCCAAAAGGAAAGCACACTCCATCTCGTTTTGAGA 2529447 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || ||||| || |||||| | || ||| | || | |||||| Sbjct 2529460 ATGCAAATCTTTGTCAAGACATTGACGGGAAAAACTATTACCTTGGAGGTGGAATCATCT 2529519 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || ||||| | |||||| |||||| || |||||||| || || || || ||| Sbjct 2529520 GATACAATCGATAACGTCAAAGCCAAGATTCAGGATAAAGAAGGTATTCCACCAGACCAA 2529579 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | || | | || |||||| | ||||| | | | | ||| || ||| Sbjct 2529580 CAACGTTTGATCTTTGCTGGTAAACAATTAGAAGACGGACGTACATTGGCCGATTACAAC 2529639 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGT 26977 |||||||||||| ||| | ||||| || Sbjct 2529640 ATTCAAAAAGAAAGCACTCTTCATCTCGT 2529668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478662052969760