Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2 217 4e-51 seq4 141 2e-28 >seq2 Length=3834998 Score = 217 bits (240), Expect = 4e-51 Identities = 630/955 (66%), Gaps = 16/955 (2%) Strand=Plus/Minus Query 363358 ATCAATTATGAGAAGGATCTCGAGTATGATATTTTCGGATATAAGACGATGGAGAAATCC 363417 |||| |||||| ||| || | ||| | | || || | ||||| | || ||| Sbjct 3101110 ATCATTTATGATCGTGATTTCCACTATAACTTCTTTGGTTTCAAGACCCTAGAACGATCA 3101051 Query 363418 TACCTATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTT 363477 ||||| | ||||||||||| | ||| |||| | || || |||||||| ||||||||| Sbjct 3101050 TACCTTTTGCGTATCAATGGAAAAGTTGCTGAAAGACCACAACATATGTTGATGCGTGTT 3100991 Query 363478 GCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGT 363537 || ||||||| || | ||||||||||| || ||||||||||| || ||| | ||| Sbjct 3100990 GCCGTTGGTATTCACGGAGAAGATGTTGATGCTGCAATTGAAACATACAACCTTTTGAGT 3100931 Query 363538 GCTCGTGTA-TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACA 363596 | ||| || || || || | ||||| | | ||||||||| |||| | ||||| Sbjct 3100930 G-AAAAGTACTTTACACATGCATCACCAACCCTTTTCAATGCTGGTACTCCAAGACCACA 3100872 Query 363597 GATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACAC 363656 ||||| || ||||| | | ||||| || |||||||| || ||||| | ||| || Sbjct 3100871 AATGTCCTCATGCTTCTTGGTTTCCATGAAAGATGATTCCATTGATGGTATTTATGATAC 3100812 Query 363657 ACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAA 363716 ||| || | |||||| | |||||||||| |||||| || || || || || ||||| Sbjct 3100811 ACTCAAAATTTGTGCAATGATTTCCAAGAGTGCAGGTGGTATCGGATTAAACATTCACAA 3100752 Query 363717 TGTTCG-TGCACA-GAACAGTTACATTCGCGGCACAGGGGGATACTCG-AATGGGCTGGT 363773 |||| | ||| || || |||||| || ||| ||| || | || || | || Sbjct 3100751 CATTCGCGGAACAGGATCA--TACATTGCAGGTACAAACGGA-ACAAGTAACGGTATCGT 3100695 Query 363774 TCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCG 363833 || ||| | ||||| ||| ||| ||||| | || || || || || || ||| | Sbjct 3100694 ACCTATGTTGCGTGTATTTAACACAACTGCTCGTTATGTTGATCAAGGAGGTAACAAGAG 3100635 Query 363834 CAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGA 363893 || || ||||| | || | || || ||| | ||| | ||||| || | || Sbjct 3100634 ACCGGGTGCTTTTGCCGTTTACGTTGAACCATGGCATTCAGATGTGTTTGAATTCTTGGA 3100575 Query 363894 GCTCCGGAAAAA-CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTT 363952 | || ||||| ||| |||||||| ||| | ||||||||||| || |||||||| || | Sbjct 3100574 TTTACGCAAAAATCAC-GGAAAAGAAGAAGTTCGTGCACGTGAACTATTCTATGCTCTAT 3100516 Query 363953 GGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCA---GGTAAGAATTGGTCACTCTTTT 364009 || || | ||| || |||||||| || || | ||| ||| |||| | | | Sbjct 3100515 GGATTCCAGACTTGTTCATGAAGCGTGTTGAACAAAATGGT--GAA-TGGTGCTTGATGT 3100459 Query 364010 GCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACG 364069 |||| |||||| || ||| | | ||| | ||||| || | || || |||| Sbjct 3100458 GCCCCAACGAATCCCCTGGTTTGGCTGATTGTTACGGTGAAGAATTTGAAAAACTTTACG 3100399 Query 364070 AAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTG 364129 | || ||| | | || | | |||| || ||||| ||| | |||| || Sbjct 3100398 AGTCTTACGAAAAGCAAGGCAGATATGTAAAGAAGATCAAAGCACAAAAGTTGTGGTATG 3100339 Query 364130 CCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCA 364189 | || | || || || | ||| || || | || | ||||||||||||||| | | Sbjct 3100338 CTATTCTTGAATCTCAAACTGAAACTGGTAACCCATTCATGTTGTACAAAGATGCAGCAA 3100279 Query 364190 ACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGA 364249 || | || ||||| || | | ||||| || || | ||| | || || || | Sbjct 3100278 ACAGAAAAAGTAACCAAAAGAATTTGGGTACCATCAAGAACTCTAACTTGTGCACAGAAA 3100219 Query 364250 TTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGC 364304 ||||||||||| || || || || |||||| || || | || ||||| || Sbjct 3100218 TTATTGAATACTGTGCACCTGATGAAGTTGCCGTGTGCAATTTGGCTTCGATTGC 3100164 Score = 116 bits (128), Expect = 1e-20 Identities = 368/560 (66%), Gaps = 28/560 (5%) Strand=Plus/Plus Query 22105 TACAAGAAAGCAGAAGCTTCCCTATGGGGTGTTTCCGAAATTGATATTTCCACTGATAAG 22164 ||||| |||||||||||||| | ||| | || |||||| | |||| ||| | Sbjct 1007213 TACAAAAAAGCAGAAGCTTCTTTCTGGACCGCAGAAGAGATTGATTTGTCCAAAGATTTG 1007272 Query 22165 ACGGATTGGC-CAA-AACTTACA-GAAAACGAACAACATTTTATCAAATATATTCTAGCA 22221 |||||| ||| || || | || ||||||| ||||| ||| | || | ||| Sbjct 1007273 CACGATTGGGACAACAAGTTGAACGACAACGAACGTCATTTCATCTCTCACGTTTTGGCA 1007332 Query 22222 TTCTTTGCTACCGCAGACGGTATAGTTTTTGAGAATCTAGT-GACTAATTTTGCATCTGA 22280 |||||||| | | || ||||| || ||| || | || || ||| || || Sbjct 1007333 TTCTTTGCCGCTTCTGATGGTATCGTCAATGAAAACTTGGTCGAACGATTCAGCGGA-GA 1007391 Query 22281 AATTCAATACCCAGAGGCCAGATGTTTCTATGGTGTGCAAATGATGATTGAAAATGTTCA 22340 | ||||| |||| || ||||| ||||||||| | ||||| ||||| ||||| |||| Sbjct 1007392 AGTTCAAGCAGCAGAAGCAAGATGCTTCTATGGTTTCCAAATCATGATGGAAAACATTCA 1007451 Query 22341 CGCGGAAACATATTCTATGATGCT----ACAGTCACTCGTAGAAGATAAAGACGAACAAC 22396 | | ||||| || ||| || || | ||| || ||| || | || |||| Sbjct 1007452 CTCAGAAACTTACTCTTTGTTGATTGATACATACATCCGT-GACCCT------GATCAAC 1007504 Query 22397 GAAA---CTTATTCCGCGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGG 22453 | | ||| ||| || ||| || |||| | | || | ||||||||||||| Sbjct 1007505 GCGAGTTCTTGTTCGATGCTATTGAAACAATTCCAGTCGTCAAAACAAAGGCAGATTGGG 1007564 Query 22454 CGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGGAACGTCTTATTGCATTTGCTG 22510 | || || ||||| |||| |||| || |||||| | | || ||||||| Sbjct 1007565 CACTAAAGTGGATTTCTGACAAGCGGGCCACATTTGCTGAACGTTTGGTCGCTTTTGCTG 1007624 Query 22511 TGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA---ATCTTTTGGCTaaaaaaaC 22567 |||||||| || ||||| ||| |||| ||| ||||| ||||| || || | Sbjct 1007625 CCGTTGAAGGTATCTTCTTCAGTGGTTCATT---CGCAAGTATCTTCTGGCTCAAGAAGC 1007681 Query 22568 GTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTC 22627 ||| | | ||||| ||| | || || || ||||| || || ||| ||||||| ||| | | Sbjct 1007682 GTGGATTGATGCCCGGTTTGACATTCTCCAATGAATTGATCAGCAGAGATGAAGGTTTAC 1007741 Query 22628 ATACCGATTTTGCGTGTATG 22647 | || ||||| || ||| || Sbjct 1007742 ACACTGATTTCGCATGTTTG 1007761 >seq4 Length=1961900 Score = 141 bits (156), Expect = 2e-28 Identities = 356/529 (67%), Gaps = 38/529 (7%) Strand=Plus/Minus Query 111426 ATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACA-ACGA 111484 ||||||||||| |||||| || ||| | || ||| || |||| | | |||| Sbjct 1780645 ATTTGGGATGGCAATGGAAGTAAGGAATTTTTGGAATCACGAGGACTTGGGCATAGACGA 1780586 Query 111485 AGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAA 111544 | ||||||||| |||||||| ||||| ||||||||| | || ||||| ||||| ||||| Sbjct 1780585 -GCAGGTGATCTAGGACCAGTATACGGCTTTCAATGGAGACATTTTGGAGCAGAATACAA 1780527 Query 111545 AACCATGCACGACTCAT-ATGATTCA---CAGGGAACTGATCAATTAC-AGAATGTCATT 111599 ||| ||| || | || || || || || || |||||||||| |||| || ||| Sbjct 1780526 AACG-TGC--GA-TGATGATTATACAGGACAAGGTGTTGATCAATTAAGAGAA-GTGATT 1780472 Query 111600 GATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAAT 111659 ||| ||||||| || || ||||| ||| | || ||| ||||||||||||| || Sbjct 1780471 GATAAAATTAAAAATAATCCAACAGATCGAAGAATAATTTTGAGTGCATGGAATCCGGCA 1780412 Query 111660 GCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGT------TTTATGTA 111713 | || ||| |||||| | ||||| |||||| | | || || | ||| | || Sbjct 1780411 GATTTAACAAAGATGGCATTACCACCTTGTCATATGTTTTGTCAATTTTTCGTTTCTTTA 1780352 Query 111714 CACGA-----------CGGG-----ATG--CTTTCATGCCAAATGTATCAGCGATCTGCT 111755 | || | || | | |||||||| ||||||||||| || ||| | Sbjct 1780351 CCTGAAAGTTCGCCTTCAGGTAAAAAAGAACTTTCATGTCAAATGTATCAACGTTCTTGT 1780292 Query 111756 GATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATC 111815 ||| | ||| | || || || || ||||| |||||||| || ||||||| | ||| Sbjct 1780291 GATTTAGGTTTAGGAGTCCCATTCAATATCGCAAGTTATGCTTTACTTACACATATGATC 1780232 Query 111816 GCTCATTTTACA-AATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGT 111874 || | | ||| || | || | ||||||| || | || |||||||| ||||| Sbjct 1780231 GCCAAAGTGACAGGATGT-GAAGCACGTGAATTGGTTTTAGCAATGGGAGATGCACATGT 1780173 Query 111875 TTACACAAACCACATTGATGCACTTAAAACACAGTTGAAGCGCAAACCA 111923 ||| | | | || |||| | || ||| ||| ||||| || ||||| Sbjct 1780172 TTATAGAGATCATGTTGAACCTCTCAAAGAACAATTGAAACGTGAACCA 1780124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352631445356