Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meira_20nashicola_20[genbank_20GCA_5F001600355.1_202016-03-01] 58 sequences; 18,015,688 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2 313 3e-80 >seq2 Length=3834998 Score = 313 bits (346), Expect = 3e-80 Identities = 1400/2181 (64%), Gaps = 65/2181 (3%) Strand=Plus/Plus Query 61850 GTGAATTGAATGGGAGCGGATGCG---GGTTTCGTACGTAGATAGTACATTCCCGTTTTT 61906 ||||||||||| |||| |||| ||| | ||||||| || || ||||||| ||| Sbjct 3099258 GTGAATTGAAT---AGCGTTTGCGGCAGGTCTTGTACGTAAGTAATAAGTTCCCGTCTTT 3099314 Query 61907 AGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGC- 61965 | || |||||||||| || |||||||| || | || || || | | | ||| Sbjct 3099315 AATCCTTTCTTCCATCCGTAGAAGTGCATACTTGTCAATT--GACCAAAT-GTAGGTGCG 3099371 Query 61966 --TATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 62023 || |||||| |||| | ||||||||| ||||| ||||| | || || ||||| Sbjct 3099372 CTTAAATGGATGTTCAAACTTTGACTTTGGCAAATGAATGCTCCACGATCGGCTGCCATA 3099431 Query 62024 TTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCT 62083 | || || | ||||| |||||||||| || || || | || || ||||| ||| Sbjct 3099432 TCAATGATTGCTTTTTGACTGATTTCCCAAACGGTCTTGTACAATCTTTTGATATCATCT 3099491 Query 62084 GGAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCA 62140 |||| || | || ||||| |||||||||| || || || || ||||| || Sbjct 3099492 GGAATTCCTGGAACGTTTTGAATTGATCCACCATGAGCAATGATTCTGTTCTTCATTGTT 3099551 Query 62141 TCATTCCATAATTTTCTCTCGGTTAAAACTC-TAAGGA-GATGCGGATTAACTACTTGAA 62198 || ||||| | | || || | ||| | || || ||||| ||||| | Sbjct 3099552 TCTGACCATAGTCCTTGTTCCACCAATGTACGTAATAACCAT--GGGTTAACAACTTGGA 3099609 Query 62199 ATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCAT 62258 ||||||| | || || | || ||||| || || ||| | ||||| | | |||| Sbjct 3099610 ATTCTCCTGCTAACACACGCCTTGTGTAGATGTTTGAGGTGAAAGGTTCAAAGCATTCAT 3099669 Query 62259 TATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTC 62318 | ||| ||||||||| || || ||||| ||||| ||||||| ||||| ||| | Sbjct 3099670 TGAATCCTAAAATTTGACTGGTAGAAGCAGTAGGCATGGGTGCCAACAATAGCGAATTAC 3099729 Query 62319 TAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTC---CCAATTCCAAAGATCCGA 62373 | |||| || |||| || || ||||||| |||| ||| ||||| ||||| || Sbjct 3099730 GTAAACCG--TGCTCTGCAATCTTTTCTTTTA---GTTCAGACCAGTTCCATAGATCGGA 3099784 Query 62374 CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATA 62433 ||| || ||||| || ||||| || ||||| | || Sbjct 3099785 TGGTGTTACGTTCCACATGTCATATTGTAATTCTCCCTTACTTGCAGGGGATCCCTCGTA 3099844 Query 62434 TGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATA 62493 ||| || |||| |||| | | ||| | ||| ||||| ||| || ||| | | || Sbjct 3099845 TGTTTCATATGTTCCTAATTCTTTAGCCAATTCGCAACTTCTCTCCAAAGCAGCATGGTA 3099904 Query 62494 AATGGTTTCGAAGATCTTCTTATTTAGATCTTGC--GCTTCCAGGCTATCAAATGGATAA 62551 || ||||| ||||| || || || |||| ||||| | ||| || || | Sbjct 3099905 GATCGTTTCAAAGAT-TTGAACGTTCAAT-TTGCGTGCTTCGGGTGAATCGAAGGGCATA 3099962 Query 62552 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62611 |||| || || || ||||| | || | || || ||||||||||| | || | | Sbjct 3099963 CCCAAGATCATGAATGCATCTGCAAGACCGTTGACTCCGATACCGATAGGACGGTGACGC 3100022 Query 62612 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62671 | ||||| | |||||| | || |||||||| ||||| |||||||| || | | Sbjct 3100023 ATGTTAGATCTGCGTGCTTCTTCGACTGGGTAATAATTGATATCAATAATTTTGTTCA-A 3100081 Query 62672 TTTCTGACA-ATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTAT 62730 || ||| || |||||| | || | | | || |||||| | | | | | Sbjct 3100082 GTTACCACAGATCACTTTGGCAACTGCGTGTAACTTCTTGAAATCATAAGTC---TTTGT 3100138 Query 62731 TACA-----AAC--ATGTT--CAATGCAACAGATGCCAGATTACAAACGGCTACCTCATT 62781 | || ||| | ||| ||| |||| || |||| ||| || ||||| || |||| Sbjct 3100139 TGCAGGGTCAACGTAGGTTGGCAAAGCAATCGAAGCCAAATTGCACACGGCAACTTCATC 3100198 Query 62782 AGCATCCGCA-TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 62840 || | | || |||| || || || ||||| | ||| ||||||||| || |||| Sbjct 3100199 AG-GTGCACAGTATTCAATAATTTCTGTGCACAAGTTAGAGTTCTTGATGGTACCCAAAT 3100257 Query 62841 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTT 62900 | | ||| ||||| ||| |||| ||||| || || | |||||||| ||||||||| Sbjct 3100258 TCTTTTGGTTACTTTTTCTGTTTGCTGCATCTTTGTACAACATGAATGGGTTACCAGTTT 3100317 Query 62901 CAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATC 62960 || | |||||||| | ||| || | ||| | | | || || || | | |||| Sbjct 3100318 CAGTTTGAGATTCAAGAATAGCATACCACAACTTTTGTGCTTTGATCTTCTTTACATATC 3100377 Query 62961 T-CTTTTCTCTTTCGTATAGTGT-ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTC 63018 | | || || ||||||| || | || | | ||| || || || || || || | Sbjct 3100378 TGCCTTGCT-TTTCGTA-AGACTCGTAAAGTTTTTCAAATTCTTCACCGTAACAATCAGC 3100435 Query 63019 CAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 63078 || ||||| |||| | || |||||||| |||| || || | | | || || || Sbjct 3100436 CAAACCAGGGGATTCGTTGGGGCACATCAAGCACCATTCACCATTTTGTTCAACACGCTT 3100495 Query 63079 CATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGT 63137 ||| || | || |||||||| ||||| ||| ||||| || | | | | ||| || | Sbjct 3100496 CATGAACAAGTCTGGAATCCATAGAGC-ATAGAATAGTTCACGTGCACGAACTTCTTCTT 3100554 Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197 |||| ||| || | ||| | ||| | | | ||| |||||||| ||||| | || Sbjct 3100555 TTCCGTGATTTTTGCGTAAATCCAAGAATTCAAACACATCTGAATGCCATGGTTCAACGT 3100614 Query 63198 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63257 | | ||| | | | || || | ||||| ||||| ||||| | || | ||| || | | Sbjct 3100615 AAACGGCAAAAGCACCCGGTCTCTTGTTACCTCCTTGATCAACATAACGAGCAGTTGTGT 3100674 Query 63258 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGC 63317 || | || | |||||| || | ||||| || ||| || || || |||| || || Sbjct 3100675 TAAATACACGCAACATAGGTACGATACCGTTACTTGTTCCGTTTGTACCTGCAATGTATG 3100734 Query 63318 TTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 63377 ||| | | ||||| || ||| || || || || ||||| | || || || | Sbjct 3100735 ATCCTGTTCCGCGAATGTTGTGAATGTTTAATCCGATACCACCTGCACTCTTGGAAATCA 3100794 Query 63378 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 63437 ||| || ||| | |||||||| || || || || |||||| ||||| || | Sbjct 3100795 TTGCACAAATTTTGAGTGTATCATAAATACCATCAATGGAATCATCTTTCATGGAAACCA 3100854 Query 63438 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63497 || || |||||||| | | ||| || ||||| || | ||| || || || | Sbjct 3100855 AGAAGCATGAGGACATTTGTGGTCTTGGAGTACCAGCATTGAAAAGGGTTGGTGATGCAT 3100914 Query 63498 GAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 63557 | ||||| | |||||| | || ||||| || ||||| || | || | ||| | Sbjct 3100915 GTGTAAAGTACTTTTCACTCAAAAGGTTGTATGTTTCAATTGCAGCATCAACATCTTCTC 3100974 Query 63558 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 63617 ||||| || || || |||||||| ||||| || || ||||||||| | | || | Sbjct 3100975 CGTGAATACCAACGGCAACACGCATCAACATATGTTGTGGTCTTTCAGCAACTTTTCCAT 3101034 Query 63618 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAG 63676 | || ||| | ||| ||| ||| | || || |||||||| |||| || || ||| Sbjct 3101035 TGATACGCAAAAGGTATGATCGTTCTAGGGTCTTGAAACCAAAGAAGTTATAGTGGAAA- 3101093 Query 63677 TCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTAC-ATCCAT 63735 || || || ||||| || | |||| | || | | || || | | | | | || Sbjct 3101094 TCACGATCATAAATGATTGCAGAGTCTAATTGTGCTTGATTCTTCATGATTGCGTTGTAT 3101153 Query 63736 GGTAATACTTGAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAA 63795 | | | | ||| || || || || || ||||| ||||| || || | | | || Sbjct 3101154 GTTGTTTC-TGAGATCATTGGGCTGTGCTTTCCATTGCGTGGATTAACGTATTCGTACAA 3101212 Query 63796 ATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATT--TGATACGGCT 63853 ||| | || |||| ||| || || ||| |||||||| | ||| ||||| || Sbjct 3101213 ATCTTTGATGACTTGACTGAACGTCTTACGTGTCTCTTTGTGCAAATTGCTGATA--GCA 3101270 Query 63854 ATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTC 63912 || | || || | | |||||||| || || ||| || | || || || |||| Sbjct 3101271 ATACGTGCTGCCAAGACAGCATAATCGGGGTGGGTTGTTGT-CTTGTATGCAGCAGTTTC 3101329 Query 63913 GGCTGCCAGAGTGTCCAATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTT 63972 ||| |||| |||| | ||| |||||||| ||||||| || || || | || || || Sbjct 3101330 GGCAGCCAAGTTGTCAAGTTCAACCGTTGTCACACCATCGTAAATACCATCAATGACTTT 3101389 Query 63973 CATAGCTATTTTAATAGGATC 63993 | | |||| |||||| || Sbjct 3101390 TCTGGTAATTTCAATAGGGTC 3101410 Score = 237 bits (262), Expect = 2e-57 Identities = 581/865 (67%), Gaps = 22/865 (3%) Strand=Plus/Minus Query 32361 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAAT 32420 || ||||| ||| |||||| | || ||| || || || ||||| || || ||| Sbjct 1008057 ACGCCCATCTTTGAGTATTCGGCAACCTTTTTCTCAAAGAAGTTAGTCTTTCCGGTTAAA 1007998 Query 32421 GATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAAT 32480 || || || ||||| |||||||||| ||||| |||| || |||| ||||| Sbjct 1007997 GAGATGTTCTCCATCCAATCGAATGGGTTGGTTGCATTGTATGCCTTTTCGTTACCCAA- 1007939 Query 32481 TCAGAAATCAAT---CTATCTGCGACA-AATTCTATATATGTTTTCATCATTTCACAATT 32536 || | |||| | ||| || ||| ||||| || ||| ||||| || | || Sbjct 1007938 --AGCCACCAATAGACGATCAGC-ACAGAATTCAATGTATTGACACATCAATTTGGAGTT 1007882 Query 32537 CATTCCTAT-AAGTTTAACTGGAAGAGCCACAGT-AAGAAATTCTTGTTCAATAGAGACC 32594 |||||| || ||||| | ||| | ||| |||| |||||| | |||||| || ||||| Sbjct 1007881 CATTCCGATTAAGTTGCA-TGGTAAAGCATCAGTTAAGAAACT-TTGTTCGATTGAGACA 1007824 Query 32595 GCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCG-GTGGATACAATAAATGTTTAAA 32653 || ||||| ||||| | ||||| || | | | | ||| ||||| | || Sbjct 1007823 GCTTCTGTGATAATCTTGTTCACTGTATCAGGATGAGCGCGCTTACGC-AAATGGCTGAA 1007765 Query 32654 CATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAA 32713 || ||||||||||||||| ||||| ||| || ||||| || || ||||| ||||| || Sbjct 1007764 CAACAAACATGCGAAATCAGTGTGTAAACCTTCATCTCTGCTGATCAATTCATTGGAGAA 1007705 Query 32714 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGA 32773 || | |||||||| | |||||||| || ||||| || || || ||||| ||| Sbjct 1007704 TGTCAAACCGGGCATCAATCCACGCTTCTTGAGCCAGAAGATACTTGCGAATGAACCACT 1007645 Query 32774 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC---T 32830 ||||| || ||||| || || ||||| || | | | || || | ||| | | Sbjct 1007644 GAAGAAGATACCTTCAACGGCAGCAAAAGCGACCAAACGTTCAGCAAATGTGGCCCGCTT 1007585 Query 32831 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTAT 32890 |||| ||||||||| | |||||||| ||||| |||| || || ||||| || || Sbjct 1007584 GTCAGAAATCCACTTTAGTGCCCAATCTGCCTTTGTTTTGACGACTGGAATTGTTTCAAT 1007525 Query 32891 AGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACT 32950 ||||| || | | | || || | || | |||||||||||||| | | Sbjct 1007524 AGCATCGAACAAGAACTCGCGTTGATCAGGGTCACGGATGTATGTATCAATCAACAAAGA 1007465 Query 32951 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTC 33010 || |||| || ||||||||||| || ||||| || || ||||||||||| || || Sbjct 1007464 GTAAGTTTCTGAGTGAATGTTTTCCATCATGATTTGGAAACCATAGAAGCATCTTGCTTC 1007405 Query 33011 GGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 33070 | || |||||| | |||||||| | || |||||||| || || || ||| Sbjct 1007404 TGCTGCTTGAACTTCTCCGCTGAATCGTTCGACCAAGTTTTCATTGACGATACCATCAGA 1007345 Query 33071 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT--AGT--T 33126 || ||||| || ||||| || || || |||| ||||| || ||| | | | Sbjct 1007344 AGCGGCAAAGAATGCCAAAACGTGAGAGATGAAATGACGTTCGT-TGTCGTTCAACTTGT 1007286 Query 33127 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 33186 | | |||||| | | |||||| || | ||| | ||||| | ||||| || || || | Sbjct 1007285 TGTCCCAATCGTGCAAATCTTTGGACAAATCAATCTCTTCTGCGGTCCAGAAAGAAGCTT 1007226 Query 33187 CTGCCTTTTTATACATATTCCAGAT 33211 |||| ||||| ||||| | ||| || Sbjct 1007225 CTGCTTTTTTGTACATTTGCCAAAT 1007201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631540616800